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Cold Spring Harbor Protocols|October 5, 2016
Preparation of Yeast DNA Sequencing LibrariesKatja Schwartz, Gavin SherlockCold Spring Harbor Protocols|October 5, 2016
High-Throughput Yeast Strain SequencingKatja Schwartz, Gavin SherlockPlos Genetics|May 21, 2010
Bulk segregant analysis by high-throughput sequencing reveals a novel xylose utilization gene from Saccharomyces cerevisiaeJared W Wenger, Katja Schwartz, Gavin SherlockPlos Genetics|August 6, 2010
A genome-wide analysis reveals no nuclear dobzhansky-muller pairs of determinants of speciation between S. cerevisiae and S. paradoxus, but suggests more complex incompatibilitiesKaty C Kao, Katja Schwartz, Gavin SherlockBMC Bioinformatics|December 20, 2011
GC-content normalization for RNA-Seq dataDavide Risso, Katja Schwartz, Gavin Sherlock, et al.Genetics|March 20, 2012
APJ1 and GRE3 homologs work in concert to allow growth in xylose in a natural Saccharomyces sensu stricto hybrid yeastKatja Schwartz, Jared W Wenger, Barbara Dunn, et al.Genome Biology|September 13, 2013
Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structureDale Muzzey, Katja Schwartz, Jonathan S Weissman, et al.Plos Genetics|May 16, 2023
Paths to adaptation under fluctuating nitrogen starvation: The spectrum of adaptive mutations in Saccharomyces cerevisiae is shaped by retrotransposons and microhomology-mediated recombinationMichelle Hays, Katja Schwartz, Danica T Schmidtke, et al.BMC Biology|August 19, 2025
Adaptive genetics reveals constraints on protein structure/function by evolving E. coli under constant nutrient limitationKatja Schwartz, Margie Kinnersley, Charles Ross Lindsey, et al.BMC Biology|February 5, 2021
Evolutionary dynamics and structural consequences of de novo beneficial mutations and mutant lineages arising in a constant environmentMargie Kinnersley, Katja Schwartz, Dong-Dong Yang, et al.Pageof 14