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Trends in Ecology & Evolution|August 28, 2013
Is there room for punctuated equilibrium in macroevolution?Matthew W Pennell, Luke J Harmon, Josef C UyedaSystematic Biology|August 1, 2014
A novel Bayesian method for inferring and interpreting the dynamics of adaptive landscapes from phylogenetic comparative dataJosef C Uyeda, Luke J HarmonAnnals of the New York Academy of Sciences|June 19, 2013
An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiologyMatthew W Pennell, Luke J HarmonSystematic Biology|April 5, 2015
Comparative Analysis of Principal Components Can be MisleadingJosef C Uyeda, Daniel S Caetano, Matthew W PennellPlos One|September 21, 2016
A Comprehensive Study of Cyanobacterial Morphological and Ecological Evolutionary Dynamics through Deep Geologic TimeJosef C Uyeda, Luke J Harmon, Carrine E BlankSystematic Biology|April 28, 2018
Rethinking phylogenetic comparative methodsJosef C Uyeda, Rosana Zenil-Ferguson, Matthew W PennellBioinformatics (Oxford, England)|April 15, 2014
geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic treesMatthew W Pennell, Jonathan M Eastman, Graham J Slater, et al.Evolution; International Journal of Organic Evolution|March 31, 2021
How should functional relationships be evaluated using phylogenetic comparative methods? A case study using metabolic rate and body temperatureJosef C Uyeda, Nicholas Bone, Sean McHugh, et al.Plos One|September 8, 2012
Trees of unusual size: biased inference of early bursts from large molecular phylogeniesMatthew W Pennell, Brice A J Sarver, Luke J HarmonThe American Naturalist|July 22, 2017
The Evolution of Energetic Scaling across the Vertebrate Tree of LifeJosef C Uyeda, Matthew W Pennell, Eliot T Miller, et al.Pageof 13