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Genome Research|October 22, 2025
Polyomino reconstructs spatial transcriptomic profiles with single-cell resolution via a region-allocation methodQuanyou Cai, Lihui Lin, Xin Liu, et al.BMC Bioinformatics|January 7, 2022
scDIOR: single cell RNA-seq data IO softwareHuijian Feng, Lihui Lin, Jiekai ChenBiophysics Reports|June 8, 2023
Practical bioinformatics pipelines for single-cell RNA-seq data analysisJiangping He, Lihui Lin, Jiekai ChenJournal of Genetics and Genomics = Yi Chuan Xue Bao|August 18, 2025
Spatiotemporal dynamics of neuron differentiation and migration in the developing human spinal cordYuan Yu, Mengjie Pan, Quanyou Cai, et al.Current Opinion in Genetics & Development|June 30, 2020
Perspectives on somatic reprogramming: spotlighting epigenetic regulation and cellular heterogeneityJiekai ChenCell Research|April 21, 2023
Single-cell RNA sequencing reveals the developmental program underlying proximal-distal patterning of the human lung at the embryonic stageShangtao Cao, Huijian Feng, Hongyan Yi, et al.IUBMB Life|October 28, 2016
Epigenetic Landmarks During Somatic ReprogrammingJiekai Chen, Duanqing PeiTrends in Cell Biology|November 8, 2018
The Battle between TET Proteins and DNA Methylation for the Right CellDongwei Li, Jiekai Chen, Duanqing PeiJournal of Molecular Cell Biology|December 6, 2011
EMT and MET as paradigms for cell fate switchingJiekai Chen, Qingkai Han, Duanqing PeiBriefings in Bioinformatics|January 7, 2026
iceDP: identifying inter-chromatin engagement via density peaks clustering algorithmRuhai Chen, Jiekai Chen, Lingling Shi, et al.Pageof 1,199