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Genetics|January 18, 2005
Detecting amino acid sites under positive selection and purifying selectionTim Massingham, Nick GoldmanSystematic Biology|November 29, 2015
Maximum Likelihood Phylogenetic Inference is Consistent on Multiple Sequence Alignments, with or without GapsJakub Truszkowski, Nick GoldmanProceedings of the National Academy of Sciences of the United States of America|July 8, 2005
An algorithm for progressive multiple alignment of sequences with insertionsAri Löytynoja, Nick GoldmanMolecular Biology and Evolution|November 23, 2006
Variation in evolutionary processes at different codon positionsLee Bofkin, Nick GoldmanBMC Bioinformatics|November 30, 2010
webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browserAri Löytynoja, Nick GoldmanPlos One|August 19, 2011
Addressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: yeasts revisitedJaqueline Hess, Nick GoldmanJournal of Molecular Biology|July 2, 2011
Markovian and non-Markovian protein sequence evolution: aggregated Markov process modelsCarolin Kosiol, Nick GoldmanSystematic Biology|November 15, 2011
Characterizing the phylogenetic tree-search problemDaniel Money, Simon WhelanBioinformatics (Oxford, England)|March 1, 2015
GeLL: a generalized likelihood library for phylogenetic modelsDaniel Money, Simon WhelanSystematic Biology|September 17, 2016
Phylogenetic Tree Estimation With and Without Alignment: New Distance Methods and BenchmarkingMarcin Bogusz, Simon WhelanPageof 12