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Molecular Biology and Evolution|November 4, 2011
The effects of alignment error and alignment filtering on the sitewise detection of positive selectionGregory Jordan, Nick GoldmanSystematic Biology|November 29, 2015
Maximum Likelihood Phylogenetic Inference is Consistent on Multiple Sequence Alignments, with or without GapsJakub Truszkowski, Nick GoldmanProceedings of the National Academy of Sciences of the United States of America|July 8, 2005
An algorithm for progressive multiple alignment of sequences with insertionsAri Löytynoja, Nick GoldmanMolecular Biology and Evolution|November 23, 2006
Variation in evolutionary processes at different codon positionsLee Bofkin, Nick GoldmanBMC Bioinformatics|November 30, 2010
webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browserAri Löytynoja, Nick GoldmanPlos One|August 19, 2011
Addressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: yeasts revisitedJaqueline Hess, Nick GoldmanJournal of Molecular Biology|July 2, 2011
Markovian and non-Markovian protein sequence evolution: aggregated Markov process modelsCarolin Kosiol, Nick GoldmanGenome Biology|October 13, 2006
Relating tissue specialization to the differentiation of expression of singleton and duplicate mouse proteinsShiri Freilich, Tim Massingham, Eric Blanc, et al.Systematic Biology|July 6, 2014
Maximum likelihood inference of small trees in the presence of long branchesSarah L Parks, Nick GoldmanNAR Genomics and Bioinformatics|September 19, 2024
A generalized protein identification method for novel and diverse sequencing technologiesBikash Kumar Bhandari, Nick GoldmanPageof 10