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Biophysical Reviews|August 12, 2017
Searching for the Pareto frontier in multi-objective protein designVikas Nanda, Sandeep V Belure, Ofer M ShirJournal of Structural Biology|April 23, 2013
Design of net-charged abc-type collagen heterotrimersAvanish S Parmar, Sohail Zahid, Sandeep V Belure, et al.Biochemistry|July 31, 2015
Metal Stabilization of Collagen and de Novo Designed Mimetic PeptidesAvanish S Parmar, Fei Xu, Douglas H Pike, et al.Evolutionary Computation|September 10, 2025
All-Quadratic Mixed-Integer Problems: A Study on Evolution Strategies and Mathematical ProgrammingGuy Zepko, Ofer M ShirEvolutionary Computation|January 13, 2010
Adaptive niche radii and niche shapes approaches for niching with the CMA-ESOfer M Shir, Michael Emmerich, Thomas BäckPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|July 15, 2014
Efficient retrieval of landscape Hessian: forced optimal covariance adaptive learningOfer M Shir, Jonathan Roslund, Darrell Whitley, et al.Proteins|August 21, 2007
Are aromatic carbon donor hydrogen bonds linear in proteins?Vikas Nanda, Ann SchmiedekampJournal of Inorganic Biochemistry|June 9, 2009
Metal-activated histidine carbon donor hydrogen bonds contribute to metalloprotein folding and functionAnn Schmiedekamp, Vikas NandaBMC Structural Biology|September 24, 2009
Mirrors in the PDB: left-handed alpha-turns guide design with D-amino acidsSrinivas Annavarapu, Vikas NandaPageof 14