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Molecular Phylogenetics and Evolution|June 21, 2020
More is needed-Thousands of loci are required to elucidate the relationships of the 'flowers of the sea' (Sabellida, Annelida)Ekin Tilic, Erfan Sayyari, Josefin Stiller, et al.
Systematic Biology|March 10, 2026
Branch Length Transforms using Optimal Tree Metric MatchingShayesteh Arasti, Puoya Tabaghi, Yasamin Tabatabaee, et al.
Bioinformatics (Oxford, England)|November 1, 2014
TIPP: taxonomic identification and phylogenetic profilingNam-Phuong Nguyen, Siavash Mirarab, Bo Liu, et al.
Biorxiv : the Preprint Server for Biology|April 27, 2026
Phlag: Scalable detection of genomics regions with unexplained phylogenetic heterogeneityAli Osman Berk Şapcı, Shayesteh Arasti, Edward L Braun, et al.
Bioinformatics (Oxford, England)|July 7, 2026
Phlag: scalable detection of genomics regions with unexplained phylogenetic heterogeneityAli Osman Berk Şapcı, Shayesteh Arasti, Edward L Braun, et al.
Cell Host & Microbe|October 10, 2014
Rethinking "enterotypes"Dan Knights, Tonya L Ward, Christopher E McKinlay, et al.
Nature Communications|October 13, 2019
Species abundance information improves sequence taxonomy classification accuracyBenjamin D Kaehler, Nicholas A Bokulich, Daniel McDonald, et al.
Nature Communications|October 1, 2025
Temporal nutrition analysis associates dietary regularity and quality with gut microbiome diversity: insights from the Food & You digital cohortRohan Singh, Daniel McDonald, Alejandra Rios Hernandez, et al.
Msystems|June 27, 2019
redbiom: a Rapid Sample Discovery and Feature Characterization SystemDaniel McDonald, Benjamin Kaehler, Antonio Gonzalez, et al.
Annual Review of Genomics and Human Genetics|April 5, 2017
The Microbiome and Human BiologyRob Knight, Chris Callewaert, Clarisse Marotz, et al.
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