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Human Molecular Genetics|May 17, 2018
Gene regulation in the 3D genomeYun Li, Ming Hu, Yin Shen
Trends in Genetics : TIG|April 11, 2022
Mapping chromatin loops in single cellsMiao Yu, Yun Li, Ming Hu
Current Issues in Molecular Biology|September 25, 2021
HPRep: Quantifying Reproducibility in HiChIP and PLAC-Seq DatasetsJonathan D Rosen, Yuchen Yang, Armen Abnousi, et al.
Plos Genetics|March 8, 2022
THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C dataBryce Rowland, Ruth Huh, Zoey Hou, et al.
Nucleic Acids Research|November 29, 2019
SAME-clustering: Single-cell Aggregated Clustering via Mixture Model EnsembleRuth Huh, Yuchen Yang, Yuchao Jiang, et al.
Bioinformatics (Oxford, England)|May 7, 2016
FastHiC: a fast and accurate algorithm to detect long-range chromosomal interactions from Hi-C dataZheng Xu, Guosheng Zhang, Cong Wu, et al.
Biorxiv : the Preprint Server for Biology|January 31, 2024
SnapFISH-IMPUTE: an imputation method for multiplexed DNA FISH dataHongyu Yu, Daiqing Wu, Guning Shen, et al.
American Journal of Human Genetics|February 5, 2021
HiC-ACT: improved detection of chromatin interactions from Hi-C data via aggregated Cauchy testTaylor M Lagler, Armen Abnousi, Ming Hu, et al.
Briefings in Bioinformatics|June 28, 2020
SMNN: batch effect correction for single-cell RNA-seq data via supervised mutual nearest neighbor detectionYuchen Yang, Gang Li, Huijun Qian, et al.
Genes|April 23, 2022
Understanding Regulatory Mechanisms of Brain Function and Disease through 3D Genome OrganizationWeifang Liu, Wujuan Zhong, Jiawen Chen, et al.
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