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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 3, 2004
Combining phylogenetic and hidden Markov models in biosequence analysisAdam Siepel, David HausslerMethods in Molecular Biology (Clifton, N.J.)|January 25, 2020
Inference of Ancestral Recombination Graphs Using ARGweaverMelissa Hubisz, Adam SiepelCurrent Opinion in Genetics & Development|September 15, 2014
Cis-regulatory elements and human evolutionAdam Siepel, Leonardo ArbizaNature Genetics|February 22, 2019
Publisher Correction: An evolutionary framework for measuring epigenomic information and estimating cell-type-specific fitness consequencesBrad Gulko, Adam SiepelMolecular Biology and Evolution|December 9, 2003
Phylogenetic estimation of context-dependent substitution rates by maximum likelihoodAdam Siepel, David HausslerGenome Research|June 29, 2019
Estimation of allele-specific fitness effects across human protein-coding sequences and implications for diseaseYi-Fei Huang, Adam SiepelBiorxiv : the Preprint Server for Biology|January 8, 2024
DNA-sequence and epigenomic determinants of local rates of transcription elongationLingjie Liu, Yixin Zhao, Adam SiepelTrends in Genetics : TIG|January 20, 2020
From Summary Statistics to Gene Trees: Methods for Inferring Positive SelectionHussein A Hejase, Noah Dukler, Adam SiepelMolecular Biology and Evolution|March 17, 2020
Phylogenetic Modeling of Regulatory Element Turnover Based on Epigenomic DataNoah Dukler, Yi-Fei Huang, Adam SiepelNature Genetics|March 14, 2017
Fast, scalable prediction of deleterious noncoding variants from functional and population genomic dataYi-Fei Huang, Brad Gulko, Adam SiepelPageof 12