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BMC Bioinformatics|January 7, 2022
SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotesJunhui Qiu, Qi Zhou, Weicai Ye, et al.BMC Bioinformatics|January 7, 2022
LaRA 2: parallel and vectorized program for sequence-structure alignment of RNA sequencesJörg Winkler, Gianvito Urgese, Elisa Ficarra, et al.BMC Bioinformatics|January 7, 2022
Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencingAtul Sharma, Pranjal Jain, Ashraf Mahgoub, et al.BMC Bioinformatics|March 16, 2021
stochprofML: stochastic profiling using maximum likelihood estimation in RLisa Amrhein, Christiane FuchsBMC Bioinformatics|March 21, 2021
SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpointsYiqun Zhang, Fengju Chen, Chad J CreightonBMC Bioinformatics|March 22, 2021
Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing dataHao Chen, Yan Lu, Dongsheng Lu, et al.BMC Bioinformatics|September 5, 2022
DMRscaler: a scale-aware method to identify regions of differential DNA methylation spanning basepair to multi-megabase featuresLeroy Bondhus, Angela Wei, Valerie A ArboledaBMC Bioinformatics|January 19, 2022
CellSeg: a robust, pre-trained nucleus segmentation and pixel quantification software for highly multiplexed fluorescence imagesMichael Y Lee, Jacob S Bedia, Salil S Bhate, et al.BMC Bioinformatics|January 15, 2022
LuxRep: a technical replicate-aware method for bisulfite sequencing data analysisMaia H Malonzo, Viivi Halla-Aho, Mikko Konki, et al.BMC Bioinformatics|November 27, 2021
LPI-HyADBS: a hybrid framework for lncRNA-protein interaction prediction integrating feature selection and classificationLiqian Zhou, Qi Duan, Xiongfei Tian, et al.Pageof 1,248