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Nature Methods|November 18, 2024
Nanopore approaches for single-molecule temporal omics: promises and challengesMeng-Yin Li, Jie Jiang, Jun-Ge Li, et al.Nature Methods|November 18, 2024
A foundation model for joint segmentation, detection and recognition of biomedical objects across nine modalitiesTheodore Zhao, Yu Gu, Jianwei Yang, et al.Nature Methods|November 18, 2024
Probe set selection for targeted spatial transcriptomicsLouis B Kuemmerle, Malte D Luecken, Alexandra B Firsova, et al.Nature Methods|November 11, 2024
EvoAI enables extreme compression and reconstruction of the protein sequence spaceZiyuan Ma, Wenjie Li, Yunhao Shen, et al.Nature Methods|October 30, 2024
CryoSTAR: leveraging structural priors and constraints for cryo-EM heterogeneous reconstructionYilai Li, Yi Zhou, Jing Yuan, et al.Nature Methods|October 8, 2025
Cell tracking with accurate error predictionMax A Betjes, Rutger N U Kok, Sander J Tans, et al.Nature Methods|October 14, 2025
Deep generative modeling of sample-level heterogeneity in single-cell genomicsPierre Boyeau, Justin Hong, Adam Gayoso, et al.Nature Methods|October 3, 2025
All-at-once RNA folding with 3D motif prediction framed by evolutionary informationAayush Karan, Elena RivasNature Methods|October 1, 2025
Giotto Suite: a multiscale and technology-agnostic spatial multiomics analysis ecosystemJiaji G Chen, Joselyn C Chávez-Fuentes, Matthew O'Brien, et al.Nature Methods|September 30, 2025
Uncovering hidden protein modifications with native top-down mass spectrometryJack L Bennett, Tarick J El-Baba, Konstantin C Zouboulis, et al.Pageof 338