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Nathan Sheffield

26PUBLICATIONS

92CO-AUTHORS

Software quality, processes and metricsGenomics and transcriptomicsBioinformatic methods developmentData mining and knowledge discoveryArtificial life and complex adaptive systems

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Publications (26)

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|Nov 24, 2025

Atacformer: A transformer-based foundation model for analysis and interpretation of ATAC-seq data.

Nathan J LeRoy, Guangtao Zheng, Oleksandr Khoroshevskyi

|Nov 24, 2025

Taming the reference genome jungle: the refget sequence collection standard.

Donald R Campbell, Timothee Cezard, Sveinung Gundersen

|Oct 28, 2025

ConceptDrift: leveraging spatial, temporal and semantic evolution of biomedical concepts for hypothesis generation.

Amir Hassan Shariatmadari, Alireza Jafari, Sikun Guo

|Aug 08, 2025

Bioconductor's Computational Ecosystem for Genomic Data Science in Cancer.

Marcel Ramos, Lori Shepherd, Nathan C Sheffield

|Nov 01, 2024

AI-readiness Criteria for Biomedical Data.

Timothy Clark, Harry Caufield, Jillian A Parker

|Aug 24, 2024

Methods for constructing and evaluating consensus genomic interval sets.

Julia Rymuza, Yuchen Sun, Guangtao Zheng

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Frequent Collaborators

10 joint publications

Nathan LeRoy

7 joint publications

Aidong Zhang

5 joint publications

Guangtao Zheng

5 joint publications

Jason P Smith

4 joint publications

Oleksandr Khoroshevskyi

3 joint publications

Julia Rymuza

3 joint publications

Erfaneh Gharavi

3 joint publications

Vincent P Reuter

2 joint publications

Silvia Medrano

2 joint publications

Monica C Munoz-Torres

Frequent Collaborators

10 joint publications

Nathan LeRoy

7 joint publications

Aidong Zhang

5 joint publications

Guangtao Zheng

5 joint publications

Jason P Smith

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