David R Kelley

22PUBLICATIONS
64CO-AUTHORS
Genome structure and regulationEvolutionary computationEvolution of developmental systemsArtificial life and complex adaptive systemsChemical and thermal processes in energy and combustion
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Publications (22)

|Jul 15, 2026
An encyclopedia of human enhancer-gene regulatory interactions.

|May 07, 2026
Sequence design for three-dimensional genome folding using Akita Semifreddo.

|Nov 24, 2025
Predicting dynamic expression patterns in budding yeast with a fungal DNA language model.

Kuan-Hao Chao, Majed Mohamed Magzoub, Emily Stoops

|Sep 26, 2025
Predicting dynamic expression patterns in budding yeast with a fungal DNA language model.

Kuan-Hao Chao, Majed Mohamed Magzoub, Emily Stoops

|Mar 03, 2025
Selective State Space Models Outperform Transformers at Predicting RNA-Seq Read Coverage.

Ian Holmes, Johannes Linder, David Kelley

|Feb 04, 2025
Interpreting the CTCF-mediated sequence grammar of genome folding with AkitaV2.

Paulina N Smaruj, Fahad Kamulegeya, David R Kelley

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Frequent Collaborators

3 joint publications

Anshul Kundaje

3 joint publications

Jesse M Engreitz

3 joint publications

Hank Jones

3 joint publications

Geoffrey Fudenberg