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Da Xu

7PUBLICATIONS
11CO-AUTHORS
Computational methods in fluid flow, heat and mass transfer (incl. computational fluid dynamics)Biomolecular modelling and designStructural biology (incl. macromolecular modelling)Image processingEvolution of developmental systems
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Journal

Publications (7)

Sort by Publication Date:
|Dec 15, 2025
Can We Extract Physics-like Energies from Generative Protein Diffusion Models?

Sudeep Sarma, Harrison Truscott, Da Xu

|Dec 11, 2025
Adapting Co-Folding Models for Structure-Based Protein-Protein Docking Through Flow Matching.

Da Xu, Lee-Shin Chu, Jeffrey J Gray

|Mar 13, 2025
Conformational landscapes of a class I ribonucleotide reductase complex during turnover reveal intrinsic dynamics and asymmetry.

Da Xu, William C Thomas, Audrey A Burnim

|Feb 26, 2024
Miffi: Improving the accuracy of CNN-based cryo-EM micrograph filtering with fine-tuning and Fourier space information.

Da Xu, Nozomi Ando

|Oct 29, 2022
Analysis of insertions and extensions in the functional evolution of the ribonucleotide reductase family.

Audrey A Burnim, Da Xu, Matthew A Spence

|Sep 01, 2022
Comprehensive phylogenetic analysis of the ribonucleotide reductase family reveals an ancestral clade.

Andrew A Burnim, Matthew A Spence, Da Xu

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Frequent Collaborators

5 joint publications

Nozomi Ando

3 joint publications

Audrey A Burnim

2 joint publications

Matthew A Spence

2 joint publications

Colin J Jackson

2 joint publications

Lee-Shin Chu

2 joint publications

Jeffrey J Gray

1 joint publications

Steve P Meisburger

1 joint publications

William C Thomas

1 joint publications

Sudeep Sarma

1 joint publications

Harrison Truscott

Frequent Collaborators

5 joint publications

Nozomi Ando

3 joint publications

Audrey A Burnim

2 joint publications

Matthew A Spence

2 joint publications

Colin J Jackson

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