Rayan Chikhi

14PUBLICATIONS
80CO-AUTHORS
Gene expression (incl. microarray and other genome-wide approaches)Proteomics and metabolomicsComputational ecology and phylogeneticsMultimodal analysis and synthesisPopulation geography
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Publications (14)

|May 07, 2026
A versatile multi-components mixed model for bacterial-Genome Wide association studies.

|Mar 06, 2026
High-quality metagenome assembly from nanopore reads with nanoMDBG.

Gaëtan Benoit, Robert James, Sébastien Raguideau

|Apr 09, 2025
Efficient and robust search of microbial genomes via phylogenetic compression.

Karel Břinda, Leandro Lima, Simone Pignotti

|Feb 03, 2025
MUSET: set of utilities for constructing abundance unitig matrices from sequencing data.

Riccardo Vicedomini, Francesco Andreace, Yoann Dufresne

|Oct 21, 2024
Constructing and personalizing population pangenome graphs.

Rayan Chikhi, Yoann Dufresne, Paul Medvedev

|Feb 14, 2024
Reference-free Structural Variant Detection in Microbiomes via Long-read Coassembly Graphs.

Kristen D Curry, Feiqiao Brian Yu, Summer E Vance

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Frequent Collaborators

2 joint publications

Zamin Iqbal

2 joint publications

Michael Baym

2 joint publications

Gregory Kucherov

2 joint publications

Paul Medvedev