Martin Beracochea

6PUBLICATIONS
34CO-AUTHORS
Microbial taxonomyAutomated software engineeringSequence analysisGeoscience data visualisationBioinformatic methods development
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Publications (6)

|Jul 31, 2026
PIMENTO: A primer inference toolkit to facilitate large-scale calling of amplicon sequence variants.

|Apr 27, 2026
HMMER web server: 2026 update.

|Jan 21, 2026
nf-core/proteinfamilies: a scalable pipeline for the generation of protein families.

Evangelos Karatzas, Martin Beracochea, Fotis A Baltoumas

|Oct 18, 2023
metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data.

Haris Zafeiropoulos, Martin Beracochea, Stelios Ninidakis

|Aug 28, 2023
VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.

Guillermo Rangel-Pineros, Alexandre Almeida, Martin Beracochea

|Jul 22, 2020
A unified catalog of 204,938 reference genomes from the human gut microbiome.

Alexandre Almeida, Stephen Nayfach, Miguel Boland

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Frequent Collaborators

6 joint publications

Robert D Finn

3 joint publications

Lorna Richardson

2 joint publications

Nikos C Kyrpides

1 joint publications

Alexandre Almeida