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Loop-mediated Isothermal Amplification (LAMP) Assays for the Species-specific Detection of Eimeria that Infect Chickens
Published on: February 20, 2015
Development of a loop-mediated isothermal amplification assay for rapid detection of subgroup J avian leukosis virus
Xiaotao Zhang1, Ming Liao, Peirong Jiao
1Key Laboratory of Animal Disease Control and Prevention of the Ministry of Agriculture, College of Veterinary Medicine, South China Agricultural University, 483 Wushan Road, Tianhe District, Guangzhou 510642, People's Republic of China.
Insights
A new loop-mediated isothermal amplification (LAMP) assay rapidly detects subgroup J avian leukosis virus (ALV-J). This sensitive diagnostic method offers a faster and more accurate alternative for identifying ALV-J infections in poultry.
Area of Science:
- Veterinary Virology
- Molecular Diagnostics
- Avian Pathology
Background:
- Subgroup J avian leukosis virus (ALV-J) poses a growing threat to breeder flocks in China.
- Accurate and rapid diagnostic tools are crucial for controlling ALV-J outbreaks.
Purpose of the Study:
- To develop and validate a loop-mediated isothermal amplification (LAMP) assay for the rapid and sensitive detection of ALV-J.
- To compare the performance of the LAMP assay with conventional PCR and virus isolation.
Main Methods:
- Development of an ALV-J-specific LAMP assay.
- Testing specificity against various ALV subgroups and related viruses.
- Evaluation of sensitivity using serial dilutions of target DNA.
- Validation using clinical samples from suspected ALV-infected breeder flocks.
Main Results:
- The LAMP assay detected ALV-J within 45 minutes at 63°C.
- High specificity was confirmed, with a distinct ladder pattern observed only for ALV-J.
- The LAMP assay demonstrated a detection limit of 5 target gene copies, up to 20 times more sensitive than conventional PCR.
- In clinical samples, the LAMP assay identified 53% of infections, compared to 43% by PCR and 41% by virus isolation.
- Positive LAMP reactions were visually confirmed by turbidity or color change.
Conclusions:
- The developed LAMP assay is a simple, rapid, and highly sensitive method for ALV-J detection.
- This assay shows significant potential for field application in diagnosing ALV-J infections in poultry.
- The LAMP assay offers a valuable alternative to conventional diagnostic methods for ALV-J surveillance.
Abstract:
Infection of breeder flocks in China with subgroup J avian leukosis virus (ALV-J) has increased recently. In this study, we have developed a loop-mediated isothermal amplification (LAMP) assay for rapid detection of ALV-J from culture isolates and clinical samples. The ALV-J-specific LAMP assay efficiently amplified the target gene within 45 min at 63 degrees C using only a simple laboratory water bath. To determine the specificity of the LAMP assay, various subgroup ALVs and other related viruses were detected. A ladder pattern on gel electrophoresis was observed for ALV-J isolates but not for other viruses. To evaluate the sensitivities of the LAMP assay and conventional PCR, the NX0101 isolate plasmid DNA was amplified by them. The detection limit of the LAMP assay was 5 target gene copies/reaction, which was up to 20 times higher than that of conventional PCR. To evaluate the application of the LAMP assay for detection of ALV-J in clinical samples, 49 samples suspected of ALV infection from breeder flocks were tested by the LAMP assay and PCR. Moreover, virus isolation from these samples was also performed using cell culture. The positive-sample ratios were 21/49 (43%) by conventional PCR, 26/49 (53%) by the LAMP assay, and 19/46 (41%) by virus isolation. Additionally, a positive LAMP reaction can be visually ascertained by the observation of turbidity or a color change after addition of SYBR green I dye. Consequently, the LAMP assay is a simple, rapid, and sensitive diagnostic method and can potentially be developed for rapid detection of ALV-J infection in the field.
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