Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

¹H NMR of Conformationally Flexible Molecules: Temporal Resolution00:52

¹H NMR of Conformationally Flexible Molecules: Temporal Resolution

811
At room temperature, the chair conformer of cyclohexane undergoes rapid ring flipping between two equivalent chair conformers at a rate of approximately 105 times per second. These two chair conformers are in equilibrium. The rapid ring flipping results in the interconversion of the axial proton to an equatorial proton and an equatorial to the axial proton. Such interconversions are too rapid and cannot be detected on the NMR timescale. Hence, the NMR spectrometer cannot distinguish between the...
811
¹H NMR of Conformationally Flexible Molecules: Variable-Temperature NMR01:15

¹H NMR of Conformationally Flexible Molecules: Variable-Temperature NMR

1.1K
The axial and equatorial protons in cyclohexane can be distinguished by performing a variable-temperature NMR experiment. In this process, except for one proton, the remaining eleven protons are replaced by deuterium. The deuterium substitution avoids the possible peak splitting caused by the spin-spin coupling between the adjacent protons. The remaining proton flips between the axial and equatorial positions.
1.1K
Newman Projections02:06

Newman Projections

16.5K
Different notations are used to represent the three-dimensional structure of molecules on two-dimensional surfaces. One of the most commonly used representations is the dash-wedge formula. The dashed wedges, solid wedges, and the plane lines indicate the groups situated behind the plane, coming out of the plane, and in the plane, respectively.
The organic molecules rotate across the single bonds leading to numerous temporary three-dimensional structures of varying energy known as...
16.5K
Molecular Models02:00

Molecular Models

38.0K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
38.0K
Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

7.9K
Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
7.9K
Conformations of Cycloalkanes02:29

Conformations of Cycloalkanes

11.6K
Adolf von Baeyer attempted to explain the instabilities of small and large cycloalkane rings using the concept of angle strain — the strain caused by the deviation of bond angles from the ideal 109.5° tetrahedral value for sp3  hybridized carbons. However, while cyclopropane and cyclobutane are strained, as expected from their highly compressed bond angles, cyclopentane is more strained than predicted, and cyclohexane is virtually strain-free. Hence, Baeyer’s theory that...
11.6K

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

Visualizing the Functional Dynamics of P-Glycoprotein and Its Modulation by Elacridar via High-Speed Atomic Force Microscopy.

International journal of molecular sciences·2026
Same author

Semi-automated modeling of reaction states in time-resolved serial femtosecond crystallography using molecular dynamics sampled conformations.

Structural dynamics (Melville, N.Y.)·2025
Same author

Flexible Fitting to Infer Atomistic-Precision Models of Large-Amplitude Conformational Dynamics in Biomolecules from High-Speed Atomic Force Microscopy Imaging.

ACS nano·2025
Same author

ResiDEM: Analytical Tool for Isomorphous Difference Electron Density Maps Utilizing Dynamic Residue Identification via Density Clustering.

Journal of chemical information and modeling·2024
Same author

Stereochemistry-Dependent Labeling of Organelles with a Near-Infrared-Emissive Phosphorus-Bridged Rhodamine Dye in Live-Cell Imaging.

Angewandte Chemie (International ed. in English)·2024
Same author

Structure determination using high-order spatial correlations in single-particle X-ray scattering.

IUCrJ·2023

相关实验视频

Updated: Jun 12, 2025

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
09:51

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

Published on: July 16, 2017

15.4K

从原子力显微镜图像中对生物分子的形态转换进行建模,使用正常模式分析.

Xuan Wu1, Osamu Miyashita2, Florence Tama1,2,3

  • 1Department of Physics, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan.

The journal of physical chemistry. B
|September 25, 2024
PubMed
概括

高速原子力显微镜 (HS-AFM) 提供了对生物分子运动的洞察力. 一种新的计算方法,NMFF-AFM,增强了HS-AFM图像分析,用于分子动态的原子模型.

更多相关视频

Time-Resolved Fluorescence Anisotropy from Single Molecules for Characterizing Local Flexibility in Biomolecules
10:23

Time-Resolved Fluorescence Anisotropy from Single Molecules for Characterizing Local Flexibility in Biomolecules

Published on: April 25, 2025

215
Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy
14:55

Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy

Published on: September 17, 2017

15.4K

相关实验视频

Last Updated: Jun 12, 2025

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
09:51

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

Published on: July 16, 2017

15.4K
Time-Resolved Fluorescence Anisotropy from Single Molecules for Characterizing Local Flexibility in Biomolecules
10:23

Time-Resolved Fluorescence Anisotropy from Single Molecules for Characterizing Local Flexibility in Biomolecules

Published on: April 25, 2025

215
Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy
14:55

Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy

Published on: September 17, 2017

15.4K

科学领域:

  • 生物物理学的生物物理.
  • 计算生物学 计算生物学
  • 显微镜的使用方法

背景情况:

  • 观察单个生物分子对于理解生物机制至关重要.
  • 高速原子力显微镜 (HS-AFM) 可视化生物分子运动在接近原生条件下.
  • HS-AFM的空间分辨率受到悬臂尖端的限制,阻碍了原子级细节的获取.

研究的目的:

  • 开发一种新的计算算法,从HS-AFM图像中导出构造动态的原子模型.
  • 为了克服HS-AFM的分辨率限制,进行详细的分子分析.
  • 为利用HS-AFM数据进行生物物理研究提供一个用户友好的工具.

主要方法:

  • 开发了一个新的计算算法,NMFF-AFM.
  • 使用正常模式分析来表示具有有限坐标的分子运动.
  • 该算法使用三种具有显著构造变化的蛋白质的合成数据进行了验证.

主要成果:

  • 该NMFF-AFM算法成功地从HS-AFM图像中推导出构造动态的原子模型.
  • 该方法减轻了与低分辨率的AFM数据相关的过度解释问题.
  • 在表现出大量形状变异的蛋白质上证明有效性.

结论:

  • NMFF-AFM是一个快速,用户友好的计算工具,用于分析HS-AFM数据.
  • 该算法增强了获得生物分子结构动态的原子细节的能力.
  • NMFF-AFM具有使用HS-AFM显著推进生物物理研究的潜力.