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Updated: Aug 23, 2026

Analyzing DNA-Protein Interactions with Streptavidin-Based Biolayer Interferometry
Published on: January 17, 2025
Coordinated regulation of replication protein A activities by its subunits p14 and p32
Klaus Weisshart1, Pavel Pestryakov, Richard W P Smith
1Institute of Molecular Biotechnology, Beutenbergstrasse 11, Jena 07745, Germany.
Abstract:
The heterotrimeric replication protein A (RPA) has multiple essential activities in eukaryotic DNA metabolism and in signaling pathways. Despite extensive analyses, the functions of the smallest RPA subunit p14 are still unknown. To solve this issue we produced and characterized a dimeric RPA complex lacking p14, RPADeltap14, consisting of p70 and p32. RPADeltap14 was able to bind single-stranded DNA, but its binding mode and affinity differed from those of the heterotrimeric complex. Moreover, in the RPADeltap14 complex p32 only minimally recognized the 3'-end of a primer in a primer-template junction. Partial proteolytic digests revealed that p14 and p32 together stabilize the C terminus of p70 against degradation. Although RPADeltap14 efficiently supported bidirectional unwinding of double-stranded DNA and interacted with both the simian virus 40 (SV40) large T antigen and cellular DNA polymerase alpha-primase, it did not support cell-free SV40 DNA replication. This inability manifested itself in a failure to support both the primer synthesis and primer elongation reactions. These data reveal that efficient binding and correct positioning of the RPA complex on single-stranded DNA requires all three subunits to support DNA replication.
Insights
Replication protein A (RPA) requires all three subunits for efficient DNA binding and replication. Removing the smallest subunit (p14) impairs DNA polymerase interactions and SV40 DNA replication.
Area of Science:
- Molecular Biology
- Biochemistry
- Genetics
Background:
- Replication protein A (RPA) is crucial for DNA metabolism and signaling in eukaryotes.
- The precise role of RPA's smallest subunit, p14, remains largely undetermined.
- Understanding RPA subunit functions is key to elucidating DNA replication mechanisms.
Purpose of the Study:
- To investigate the function of the smallest RPA subunit, p14.
- To characterize a dimeric RPA complex (RPADeltap14) lacking p14.
- To determine the necessity of all three RPA subunits for DNA replication.
Main Methods:
- Production and characterization of a p14-deficient RPA complex (RPADeltap14).
- Analysis of single-stranded DNA binding affinity and mode.
- Assessment of primer-template junction recognition and DNA polymerase interactions.
- Evaluation of RPADeltap14's ability to support SV40 DNA replication in vitro.
Main Results:
- RPADeltap14 exhibited altered single-stranded DNA binding compared to the heterotrimeric complex.
- The p14 and p32 subunits cooperate to stabilize the p70 subunit.
- RPADeltap14 could not support cell-free SV40 DNA replication, failing in primer synthesis and elongation.
- Despite supporting DNA unwinding and interacting with SV40 T antigen and DNA polymerase alpha-primase, RPADeltap14 was insufficient for replication.
Conclusions:
- All three subunits of RPA are essential for efficient binding and proper positioning on single-stranded DNA.
- The p14 subunit plays a critical role in supporting DNA replication, particularly primer synthesis and elongation.
- The study highlights the indispensable nature of the complete heterotrimeric RPA complex for eukaryotic DNA replication.
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