Topological segmentation in three-dimensional vector fields
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Updated: Aug 22, 2026

From Voxels to Knowledge: A Practical Guide to the Segmentation of Complex Electron Microscopy 3D-Data
Published on: August 13, 2014
Karim Mahrous1, Janine Bennett, Gerik Scheuermann
1Center for Image Processing and Integrated Computing, Computer Science Department, University of California, Davis, CA 95616, USA. kmmahrous@ucdavis.edu
Abstract:
We present a new method for topological segmentation in steady three-dimensional vector fields. Depending on desired properties, the algorithm replaces the original vector field by a derived segmented data set, which is utilized to produce separating surfaces in the vector field. We define the concept of a segmented data set, develop methods that produce the segmented data by sampling the vector field with streamlines, and describe algorithms that generate the separating surfaces. This method is applied to generate local separatrices in the field, defined by a movable boundary region placed in the field. The resulting partitions can be visualized using standard techniques for a visualization of a vector field at a higher level of abstraction.
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