Related Experiment Video
Updated: Jul 31, 2026

06:29
Workflow and Tools for Crystallographic Fragment Screening at the Helmholtz-Zentrum Berlin
Published on: March 3, 2021
C-H...O and other weak hydrogen bonds. From crystal engineering to virtual screening
1School of Chemistry, University of Hyderabad, Hyderabad, 500046, India. gautam_desiraju@yahoo.com
Summary
Weak hydrogen bonds involving carbon donors were once overlooked but are now recognized as crucial in molecular structure. This understanding aids in biomolecular structure analysis and structure-based drug design.
Area of Science:
- Chemistry
- Structural Biology
- Biochemistry
Background:
- Historically, weak hydrogen bonds (X-H...A), particularly those with carbon donors (X=C) and pi-system acceptors (A), were largely disregarded.
- Before the 1980s, these interactions were considered insignificant in chemical and biological systems.
- A paradigm shift occurred in the early 1980s, leading to increased recognition of their importance.
Purpose of the Study:
- To highlight the evolving understanding of weak hydrogen bonds.
- To emphasize their significance in various molecular structures.
- To connect this knowledge to modern applications in biomolecular studies and drug design.
Main Methods:
- Review of historical scientific literature and crystallographic data.
- Analysis of small molecule crystal structures and solution-state studies.
- Application of established knowledge to contemporary biomolecular structure elucidation.
Main Results:
- Weak C-H...pi hydrogen bonds are now understood to play a significant role in stabilizing molecular structures.
- These interactions are prevalent in both crystalline solids and solution phases.
- The recognition of these bonds has advanced the field of structural biology.
Conclusions:
- Weak hydrogen bonds, once dismissed, are now integral to understanding molecular interactions.
- Knowledge of C-H...pi interactions is vital for deciphering biomolecular structures.
- This understanding has direct implications for structure-based drug design strategies.
Related Concept Videos
Hydrogen Bonds
Hydrogen BondsHydrogen bonds are weak attractions between atoms that have formed other chemical bonds. One of these atoms is electronegative, like oxygen, and has a partial negative charge. The other is a hydrogen atom that has bonded with another electronegative atom and has a partial positive charge.Hydrogen Bonds Control the World!Because hydrogen has very weak electronegativity when it binds with a strongly electronegative atom, such as oxygen or nitrogen, electrons in the bond are...
Crystal Field Theory - Octahedral Complexes
Crystal Field Theory
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
Noncovalent Attractions in Biomolecules
Noncovalent attractions are associations within and between molecules that influence the shape and structural stability of complexes. These interactions differ from covalent bonding in that they do not involve sharing of electrons.
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
Introduction to Chemical Bonds
Chemical Bonds
The electrons of the outermost energy level determine the energetic stability of the atom and its tendency to form chemical bonds with other atoms. The innermost electron shell has a maximum capacity of two electrons, but the next two electron shells can each have a maximum of eight electrons. This is known as the octet rule, which states that, with the exception of the innermost shell, atoms are most stable energetically when they have eight electrons in their valence shell, the...
The electrons of the outermost energy level determine the energetic stability of the atom and its tendency to form chemical bonds with other atoms. The innermost electron shell has a maximum capacity of two electrons, but the next two electron shells can each have a maximum of eight electrons. This is known as the octet rule, which states that, with the exception of the innermost shell, atoms are most stable energetically when they have eight electrons in their valence shell, the...
Hydrogen Bonds
A hydrogen bond is formed when a weakly positive hydrogen atom already bonded to one electronegative atom (for example, the oxygen in the water molecule) is attracted to another electronegative atom from another polar molecule, such as water (H2O), hydrogen fluoride (HF), or ammonia (NH3). The huge electronegativity difference between the H atom (2.1) and the atom to which it is bonded (4.0 for an F atom, 3.5 for an O atom, or 3.0 for an N atom), combined with the very small size of an H atom...

