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Updated: Aug 13, 2026

08:04
Analyzing Platelet Subpopulations by Multi-color Flow Cytometry
Published on: June 10, 2025
Confounding effects of platelets on flow cytometric analysis and cell-sorting experiments using blood-derived cells
David C McFarland1, Cindy Zhang, Heath C Thomas
1Department of Safety Assessment/Cellular Pathology, GlaxoSmithKline, King of Prussia, Pennsylvania, USA. david.c.mcfarland@gsk.com
Summary
Platelet contamination is a common issue in flow cytometry analysis of blood cells. Adding a platelet marker can help identify and manage this contamination in cell sorting and immunophenotypic studies.
Area of Science:
- Immunology
- Cell Biology
- Hematology
Background:
- Flow cytometric analysis and cell sorting of peripheral blood leukocytes are standard laboratory techniques.
- Platelet contamination in these analyses is often overlooked, potentially affecting results.
Purpose of the Study:
- To investigate the extent of platelet contamination during flow cytometric analysis and cell sorting of rat blood leukocytes.
- To evaluate the impact of different sample preparation methods on platelet contamination.
Main Methods:
- Sorting of red blood cells, platelets, lymphocytes, monocytes, and granulocytes from rat blood.
- Presort enrichment using differential centrifugation.
- Leukocyte sample preparation with ammonium chloride lysis of red blood cells.
Main Results:
- Significant platelet contamination occurred unless proper precautions were taken during cell sorting.
- The level of platelet contamination varied between experiments, with neutrophils/granulocytes showing the highest association in samples prepared with ammonium chloride lysis.
Conclusions:
- Incorporating an immunophenotypic marker for platelet identification is a simple and effective measure to assess contamination.
- This practice should be routine for flow cytometric analysis and cell sorting of blood-derived cells.
- Both free and cell-associated platelets contribute to contamination and require specific attention.

