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Updated: May 5, 2026

Analyzing Protein Dynamics Using Hydrogen Exchange Mass Spectrometry
Published on: November 29, 2013
Structural Analysis of E. coli hsp90 reveals dramatic nucleotide-dependent conformational rearrangements
Andrew K Shiau1, Seth F Harris, Daniel R Southworth
1Howard Hughes Medical Institute and Department of Biochemistry and Biophysics, University of California, San Francisco, 94158, USA.
The heat-shock protein 90 (Hsp90) chaperone family
Area of Science:
- Biochemistry
- Molecular Biology
- Structural Biology
Background:
- Heat-shock proteins (Hsp90) are vital molecular chaperones in eukaryotes, essential for protein folding, signaling, proliferation, and survival.
- HtpG from Escherichia coli is the ortholog of the Hsp90 chaperone family.
Purpose of the Study:
- To investigate the structural impact of nucleotide binding on the Hsp90 ortholog, HtpG.
- To elucidate the mechanism by which nucleotides regulate HtpG conformation and client protein interactions.
Main Methods:
- Electron microscopy (EM) was employed to visualize HtpG structures.
- X-ray crystallography was used for higher-resolution structural characterization of nucleotide-free and ADP-bound HtpG.
Main Results:
- Nucleotide-free, AMPPNP-bound, and ADP-bound states of HtpG exhibit distinct conformations.
- Nucleotide-free HtpG adopts an "open" conformation with exposed hydrophobic elements.
- ADP binding induces significant conformational changes, shielding hydrophobic elements and suggesting a regulatory mechanism.
Conclusions:
- Nucleotide binding acts as a critical switch, controlling HtpG conformation.
- The conformational changes driven by ADP binding are key to regulating client protein association and dissociation.
- Understanding HtpG's nucleotide-dependent structural dynamics provides insights into Hsp90 chaperone function.
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