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AllChem: generating and searching 10(20) synthetically accessible structures.
Richard D Cramer1, Farhad Soltanshahi, Robert Jilek
1Tripos Inc., 1699 South Hanley Road, St. Louis, MO 63144, USA. cramer@tripos.com
Journal of Computer-Aided Molecular Design
|January 27, 2007
Summary
AllChem is a novel system for generating and searching vast numbers of medicinally relevant chemical structures. It aids synthetic chemists by providing synthetic routes and cost-benefit analyses for drug discovery decisions.
Area of Science:
- Computational Chemistry
- Medicinal Chemistry
- Drug Discovery
Background:
- Vast chemical space exploration is crucial for identifying novel drug candidates.
- Current methods for designing and synthesizing potential drug molecules are often limited in scope and efficiency.
Purpose of the Study:
- To introduce AllChem, a system designed for the practical generation and searching of approximately 10(20) synthetically accessible and medicinally relevant structures.
- To enhance the decision-making process in lead discovery and optimization by integrating synthetic route information and design rationale.
Main Methods:
- Development of a computational system (AllChem) for chemical structure generation.
- Integration of synthetic accessibility assessment and medicinal relevance criteria.
- Inclusion of synthetic route prediction and cost-benefit analysis functionalities.
Main Results:
- The AllChem system enables the exploration of an unprecedentedly large chemical space.
- It provides synthetic chemists with practical tools to evaluate potential drug candidates based on synthetic feasibility and medicinal relevance.
- The system facilitates a simultaneous consideration of costs and benefits during the drug design process.
Conclusions:
- AllChem represents a significant advancement in computational drug discovery, offering a powerful platform for exploring vast chemical diversity.
- The system's ability to provide synthetic insights and economic considerations promises to streamline the drug discovery and optimization workflow for synthetic chemists.
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