Related Experiment Video
Updated: Jun 27, 2026

07:06
Principles of Site-Specific Recombinase (SSR) Technology
Published on: May 29, 2008
Principles of site-specific recombinase (SSR) technology.
1Max Plank Institute for Molecular Cell Biology and Genetics, Dresden. buchholz@mpi-cbg.de
Journal of Visualized Experiments : Jove
|December 11, 2008
Summary
Site-specific recombinase (SSR) technology, particularly the Cre/lox system, enables precise gene manipulation for functional studies. This conditional mutagenesis approach offers advantages over traditional knock-outs, allowing targeted gene deletion in specific tissues.
Area of Science:
- Molecular Biology
- Genetics
- Biotechnology
Background:
- Site-specific recombinase (SSR) technology is crucial for manipulating gene structure and function.
- The Cre/lox system, derived from bacteriophages, utilizes Cre recombinase and loxP sites for DNA recombination.
- Cre recombinase acts as a Type I topoisomerase, catalyzing DNA recombination between loxP sites without cofactors.
Purpose of the Study:
- To highlight the utility of site-specific recombinase technology in exploring gene function.
- To explain the mechanism of the Cre/lox system in targeted DNA manipulation.
- To emphasize the advantages of conditional mutagenesis over traditional gene knock-outs.
Main Methods:
- Employing the Cre/lox system, where genes of interest are flanked by loxP sites ('floxed').
- Crossing genetically modified animals with those expressing Cre recombinase under tissue-specific promoters.
- Utilizing Cre recombinase to bind loxP sites and induce excision of the 'floxed' gene in specific tissues.
Main Results:
- Controlled gene deletion is achieved in targeted tissues and at specific developmental time points.
- The Cre/lox system allows for precise "scissors and glue" DNA rearrangement.
- Recombination products are dependent on the orientation of asymmetric loxP sequences.
Conclusions:
- Site-specific recombinase technology, especially the Cre/lox system, is an integral tool for molecular biology research.
- Conditional mutagenesis via SSR technology facilitates the investigation of gene function with significant advantages over constitutive knock-outs.
- This technology enables the study of gene function in specific contexts, overcoming limitations of lethal gene deletions.
Related Concept Videos
Conservative Site-specific Recombination and Phase Variation
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
The recognition sites for Cre recombinase called LoxP...
Homologous Recombination
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
Recombinant DNA
Overview
Recombinant DNA
Overview
Single-Strand DNA Binding Proteins
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
