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RNA-seq03:21

RNA-seq

RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
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Sanger Sequencing01:57

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DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
Maxam-Gilbert Sequencing01:05

Maxam-Gilbert Sequencing

In the same year as the discovery of the Sanger sequencing method, another group of scientists, Allan Maxam and Walter Gilbert, demonstrated their chemical-cleavage method for DNA sequencing. The Maxam-Gilbert method relies on using different chemicals that can cleave the DNA sequence at specific sites, the separation of resulting DNA fragments of variable size using electrophoresis, and deciphering the DNA sequence from the resulting gel bands.
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Preparation of Samples for Electron Microscopy01:20

Preparation of Samples for Electron Microscopy

To be visualized by an electron microscope, either transmission or scanning, biological samples need to be fixed (stabilized) so the electron beam does not destroy them and dried thoroughly (desiccated/dehydrated) so the vacuum does not affect them. Fixation needs to be done as quickly as possible because the sample properties will start changing as soon as it is removed from its natural environment. For example, in a tissue sample, the oxygen levels begin decreasing, causing an altered...

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Related Experiment Video

Updated: Jun 18, 2026

DNA Origami-Mediated Substrate Nanopatterning of Inorganic Structures for Sensing Applications
08:59

DNA Origami-Mediated Substrate Nanopatterning of Inorganic Structures for Sensing Applications

Published on: September 27, 2019

Molding single DNA molecules in metals and sample preparation for electronic sequencing.

John A Lund1, Babak A Parviz

  • 1Electrical Engineering Department at the University of Washington Seattle, WA 98195, USA. jlund@ee.washington.edu

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
|December 8, 2009
PubMed
Summary

Researchers molded single DNA molecules using platinum molds, creating nanoscale structures that follow DNA contours. This technique enables single-molecule electron tunneling analysis, advancing molecular electronics and nanolithography.

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Related Experiment Videos

Last Updated: Jun 18, 2026

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Area of Science:

  • Nanotechnology
  • Molecular Biology
  • Materials Science

Background:

  • DNA's unique structure and properties make it a candidate for nanoscale applications.
  • Current methods for manipulating and analyzing single DNA molecules face limitations in resolution and scalability.

Purpose of the Study:

  • To demonstrate a novel technique for molding single DNA molecules using platinum molds.
  • To analyze the fidelity and scalability of the molding process down to the single-molecule level.
  • To perform electron tunneling spectroscopy on DNA molecules embedded within the molds.

Main Methods:

  • Utilizing 8 nm thin platinum molds for the precise molding of individual DNA molecules.
  • Employing Scanning Tunneling Microscopy (STM) for imaging and analyzing the molded structures.
  • Conducting electron tunneling analysis on the embedded DNA molecules within the platinum molds.

Main Results:

  • Successfully molded single DNA molecules, observing apparent 1 nm depth structures via STM imaging.
  • Confirmed that the molded structures accurately replicate the contours of the original DNA molecules.
  • Verified the technique's capability to scale down to single-molecule precision and demonstrated its application in electron tunneling analysis.

Conclusions:

  • The platinum molding technique effectively captures and preserves single DNA molecule structures at the nanoscale.
  • This method provides a robust platform for high-resolution imaging and functional analysis of individual DNA molecules.
  • The demonstrated electron tunneling analysis on embedded DNA opens avenues for molecular electronics and biosensing applications.