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Updated: May 22, 2026

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
Epigenetic alteration of CCDC67 and its tumor suppressor function in gastric cancer
Sung-Joon Park1, Hay-Ran Jang, Mirang Kim
1Medical Genomics Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-806, Korea.
Abstract:
In this study, the promoter of the gene coiled-coil domain-containing 67 (CCDC67) was found to be frequently methylated in gastric cancer cell lines and in primary gastric tumors, as examined by restriction landmark genomic scanning. In addition, CCDC67 expression was down-regulated in 72.7% of gastric cancer cell lines tested. In most cases, gene down-regulation was associated with CpG hypermethylation in the CCDC67 promoter. Treatment with 5-aza-2'-deoxycytidine and/or trichostatin A restored CCDC67 expression in down-regulated cell lines. Pyrosequencing analysis of 150 paired primary gastric cancer samples revealed that promoter CpG methylation was increased in 74% of tested tumors compared with paired adjacent normal tissues, and this hypermethylation correlated significantly with down-regulation of CCDC67. CCDC67 protein was localized to the cell membrane by immunocytochemistry. Stable transfection of a CCDC67 gene in one gastric cancer cell line inhibited adhesion-dependent and -independent colony formation, and CCDC67 expression suppressed tumorigenesis in nude mice. We suggest that CCDC67 is a putative tumor suppressor gene that is silenced in gastric cancers by promoter CpG methylation and that it may play an important role in cell signaling and migration related to tumorigenesis.
Insights
Gastric cancer cells frequently show silenced coiled-coil domain-containing 67 (CCDC67) due to promoter methylation. Restoring CCDC67 expression suppressed tumor growth, suggesting it is a tumor suppressor gene.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Gastric cancer is a significant global health concern.
- Epigenetic alterations, particularly promoter methylation, play a crucial role in cancer development.
- The function of coiled-coil domain-containing 67 (CCDC67) in gastric tumorigenesis is largely unknown.
Purpose of the Study:
- To investigate the role of CCDC67 in gastric cancer.
- To determine if CCDC67 promoter methylation is associated with its gene expression in gastric cancer.
- To evaluate the functional impact of CCDC67 on gastric cancer cell behavior and tumorigenesis.
Main Methods:
- Restriction landmark genomic scanning and pyrosequencing were used to analyze CCDC67 promoter methylation.
- Gene expression levels were assessed in gastric cancer cell lines and primary tumors.
- Functional assays included cell adhesion, colony formation, and in vivo tumorigenesis studies in nude mice.
- Treatment with epigenetic modifiers (5-aza-2'-deoxycytidine and trichostatin A) was employed to assess CCDC67 re-expression.
Main Results:
- CCDC67 promoter CpG hypermethylation was frequently observed in gastric cancer cell lines (72.7%) and primary tumors (74%).
- CCDC67 gene expression was significantly down-regulated in most gastric cancer samples, correlating with promoter hypermethylation.
- Restoration of CCDC67 expression via epigenetic drug treatment reactivated the gene.
- Overexpression of CCDC67 inhibited colony formation and suppressed tumor growth in vivo, indicating a tumor-suppressive role.
Conclusions:
- CCDC67 is identified as a putative tumor suppressor gene in gastric cancer.
- Silencing of CCDC67 by promoter CpG methylation is a key mechanism in gastric tumorigenesis.
- CCDC67 may be involved in cell signaling and migration pathways critical for tumor development.
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