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Related Concept Videos

Cancer-Critical Genes II: Tumor Suppressor Genes01:05

Cancer-Critical Genes II: Tumor Suppressor Genes

Genes usually encode proteins necessary for the proper functioning of a healthy cell. Mutations can often cause changes to the gene expression pattern, thereby altering the phenotype.
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...

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Related Experiment Video

Updated: May 7, 2026

Discovery of Driver Genes in Colorectal HT29-derived Cancer Stem-Like Tumorspheres
06:52

Discovery of Driver Genes in Colorectal HT29-derived Cancer Stem-Like Tumorspheres

Published on: July 22, 2020

Network-based inference framework for identifying cancer genes from gene expression data.

Bo Yang1, Junying Zhang, Yaling Yin

  • 1School of Computer Science and Technology, Xidian University, Xi'an 710071, China.

Biomed Research International
|September 28, 2013
PubMed
Summary
This summary is machine-generated.

This study introduces a novel differential network framework for identifying cancer-related genes. The method improves accuracy in detecting cancer biomarkers, including newly discovered ones for breast cancer.

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Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases
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Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases

Published on: May 17, 2019

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Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases
07:41

Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases

Published on: May 17, 2019

Area of Science:

  • Bioinformatics
  • Genomics
  • Computational Biology

Background:

  • Accurate identification of cancer genes is crucial for understanding tumor behavior.
  • Existing methods for detecting oncogenes face challenges in accuracy and biological relevance.

Purpose of the Study:

  • To develop a robust framework for detecting biologically meaningful cancer-related genes.
  • To improve the accuracy of identifying cancer biomarkers using a differential network approach.

Main Methods:

  • A novel gene regulatory network construction algorithm using boosting regression.
  • Independent construction of gene regulatory networks from case and control samples.
  • Development of a differential-network model by subtracting networks to rank differentially expressed hub genes.

Main Results:

  • The differential network method significantly improved accuracy compared to t-test and lasso on synthetic and real breast cancer datasets.
  • Six candidate breast cancer genes (TSPYL5, CD55, CCNE2, DCK, BBC3, MUC1) were identified and validated.
  • TSPYL5, CCNE2, and CD55 show known or suspected roles, while three are newly identified breast cancer biomarkers.

Conclusions:

  • The differential network framework offers a powerful approach for identifying cancer-associated genes.
  • This method can be extended to discover biomarkers for other complex diseases.
  • The study highlights novel biomarkers for breast cancer, advancing diagnostic and prognostic capabilities.