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Updated: Apr 5, 2026

Fluorescence Microscopy Methods for Determining the Viability of Bacteria in Association with Mammalian Cells
Published on: September 5, 2013
New fluorescein precursors for live bacteria detection.
Celia Guilini1, Corinne Baehr2, Etienne Schaeffer1
1Biotechnologie et Signalisation Cellulaire, UMR 7242 CNRS/Université de Strasbourg, and Labex Medalis, ESBS, 300 Boulevard Sébastien Brant, 67412 Illkirch, France.
New chemical modifications improve live bacteria detection in drinking water. Triembarine, a novel probe, offers 6-10 times greater sensitivity than CFDA, enhancing water safety through more reliable bacterial monitoring.
Area of Science:
- Microbiology
- Analytical Chemistry
- Biotechnology
Background:
- Live bacteria detection in drinking water is crucial for human safety.
- Current methods using carboxyfluorescein diacetate (CFDA) are limited by poor membrane permeation due to the probe's charge at physiological pH.
- Improving probe diffusion is key to enhancing detection sensitivity and reliability.
Purpose of the Study:
- To develop novel fluorescent probes with improved cell membrane permeability for more sensitive live bacteria detection.
- To chemically modify the carboxyl group of CFDA and related compounds to neutralize charge and enhance diffusion.
- To evaluate the efficacy of these modified probes in detecting live bacteria in aqueous samples.
Main Methods:
- Chemical synthesis of CFDA derivatives, focusing on modifying the 5-carboxyl group.
- Testing probe stability in biological media and their ability to penetrate bacterial membranes.
- Assessing the metabolic conversion of probes into fluorescent species within live bacteria.
- Comparing the sensitivity of novel probes against CFDA using fluorescence detection.
- Evaluating the effect of contrast agents (trypan blue, brilliant blue R, bromophenol blue) on signal-to-noise ratio.
Main Results:
- Ethylamido derivatives of CFDA and Oregon Green diacetate/diacetoxymethyl ester demonstrated stability, cell penetration, and conversion to fluorescent species.
- Live bacteria were successfully detected, with no labeling of non-viable cells.
- Derivatives with ester or thiourea modifications of the carboxyl group showed poor performance.
- The probe 'triembarine' (5-ethylaminocarboxy-Oregon Green, 3',6'diacetoxymethyl ester) achieved 6-10 times higher sensitivity than CFDA.
- Contrast agents like trypan blue and brilliant blue R enhanced signal-to-noise by quenching extracellular fluorescence.
Conclusions:
- Chemical modification of the carboxyl group significantly enhances the performance of fluorescent bacterial viability probes.
- Triembarine represents a superior probe for live bacteria detection, offering substantially increased sensitivity.
- Contrast agents can be utilized to optimize detection accuracy and standardize measurements in water quality monitoring.
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