SynRio: R and Shiny based application platform for cyanobacterial genome analysis

Area of Science:

• Genomics
• Bioinformatics
• Cyanobacterial Research

Background:

• The Synechocystis PCC 6803 genome is a key model organism in cyanobacterial research.
• Existing analysis tools may lack user-friendly interactive visualization capabilities.

Purpose of the Study:

• To develop a web-based portal for comprehensive analysis of the Synechocystis PCC 6803 genome.
• To provide interactive visualization and data download functionalities for genomic data.

Main Methods:

• Developed using R programming language with the Shiny package for a dynamic web interface.
• The portal facilitates user-driven data selection for customized genome visualization.

Main Results:

• SynRio offers an interactive platform for exploring the Synechocystis PCC 6803 genome.
• Users can visualize specific genomic data and download selected datasets.

Conclusions:

• SynRio enhances the accessibility and usability of Synechocystis PCC 6803 genomic data.
• The portal supports data-driven research in cyanobacterial genomics.