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A scientist's guide for submitting data to ZFIN
D G Howe1, Y M Bradford1, A Eagle1
1University of Oregon, Eugene, OR, United States.
Methods in Cell Biology
|July 23, 2016
Summary
The Zebrafish Model Organism Database (ZFIN) centralizes zebrafish genetic and genomic data. It provides guidance for researchers submitting diverse data types, ensuring optimal integration and accessibility for the scientific community.
Area of Science:
- Genomics
- Bioinformatics
- Zebrafish Research
Background:
- The Zebrafish Model Organism Database (ZFIN) is a primary resource for zebrafish (Danio rerio) genetic and genomic data.
- Data curation involves manual review of publications and direct submissions from repositories.
- Advancements in genomic science generate large datasets necessitating web-based presentation.
Purpose of the Study:
- To guide the zebrafish research community on data submission requirements for ZFIN.
- To identify data types compatible with the ZFIN database.
- To outline optimal data formats for integration into ZFIN.
Main Methods:
- Identification of supported data types (mutants, gene expression, phenotypes, etc.).
- Definition of required and optional data elements for submission.
- Development of tools and templates for data acquisition and organization.
Main Results:
- Comprehensive list of data types accepted by ZFIN.
- Detailed criteria for data submission, including minimum information requirements.
- Availability of resources to facilitate data preparation and submission.
Conclusions:
- ZFIN plays a crucial role in managing and disseminating zebrafish research data.
- Clear guidelines and tools are essential for effective data integration.
- Ongoing updates to ZFIN resources will support evolving data submission needs.
