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Biotin-based Pulldown Assay to Validate mRNA Targets of Cellular miRNAs
Published on: June 12, 2018
microRNA-binding proteins: specificity and function
Richard W Zealy1, Samuel P Wrenn1, Sylvia Davila1
1Department of Biochemistry and Molecular Biology, College of Medicine, Medical University of South Carolina, Charleston, SC, USA.
Abstract:
microRNA (miRNA) and RNA-binding proteins (RBPs) have been studied widely in post-transcriptional gene regulation. Previous work has focused on defining how miRNA and RBPs modulate target mRNA decay and translation as well as investigating how they interplay each other. Emerging studies indicate that certain RBPs other than the AGO-family proteins directly interact with mature miRNAs. These findings implicate competitive binding of RBPs to target miRNAs, sequestration of miRNAs from AGO, promotion of AGO binding to miRNAs, and transfer of miRNAs from RBPs to AGO. Recent work also indicates that AGO-free cytoplasmic miRNAs establish complexes with novel miRNA-binding proteins (miRBPs). This review covers the recent discovery of novel miRBPs, offering a new perspective on the miRNA-mediated gene silencing mechanism. WIREs RNA 2017, 8:e1414. doi: 10.1002/wrna.1414 For further resources related to this article, please visit the WIREs website.
Insights
RNA-binding proteins (RBPs) and microRNAs (miRNAs) regulate gene expression. Novel miRNA-binding proteins (miRBPs) interact with AGO-free miRNAs, revealing new insights into miRNA-mediated gene silencing.
Area of Science:
- Molecular Biology
- Gene Regulation
- Biochemistry
Background:
- MicroRNAs (miRNAs) and RNA-binding proteins (RBPs) are key regulators of post-transcriptional gene expression.
- Research has elucidated how miRNAs and RBPs modulate mRNA decay and translation, and their interplay.
- Emerging evidence shows direct interactions between RBPs and mature miRNAs beyond AGO-family proteins.
Purpose of the Study:
- To review recent discoveries of novel miRNA-binding proteins (miRBPs).
- To provide a new perspective on miRNA-mediated gene silencing mechanisms.
- To highlight the emerging role of AGO-free cytoplasmic miRNAs complexing with miRBPs.
Main Methods:
- Literature review of recent studies on miRNA-RBP interactions.
- Analysis of emerging findings on novel miRBPs.
- Synthesis of current knowledge on miRNA-mediated gene silencing pathways.
Main Results:
- Certain RBPs directly interact with mature miRNAs, influencing miRNA-AGO association.
- Mechanisms include competitive binding, miRNA sequestration from AGO, promotion of AGO binding, and miRNA transfer.
- AGO-free cytoplasmic miRNAs form complexes with novel miRBPs, expanding the known regulatory network.
Conclusions:
- Novel miRBPs represent a significant addition to the understanding of miRNA function.
- These interactions offer new perspectives on the complexity of miRNA-mediated gene silencing.
- The discovery of AGO-free miRNA complexes broadens the scope of post-transcriptional regulation.
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