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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
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Central Nervous System Infection Diagnosis by Next-Generation Sequencing: A Glimpse Into the Future?
Nguyen Thi Hoang Mai1, Nguyen Hoan Phu2, Le Nguyen Truc Nhu1
1Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Open Forum Infectious Diseases
|May 9, 2017
Abstract
None:
Japanese encephalitis virus was detected by deep sequencing for the first time in urine of a 16-year-old boy with encephalitis. Seroconversion and polymerase chain reaction analysis confirmed the metagenomics finding. Urine is useful for diagnosis of flaviviral encephalitis, whereas deep sequencing can be a panpathogen assay for the diagnosis of life-threatening infectious diseases.
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