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Updated: Feb 7, 2026

Uracil-DNA Glycosylase Assay by Matrix-assisted Laser Desorption/Ionization Time-of-flight Mass Spectrometry Analysis
Published on: April 22, 2022
Ultraviolet relaxation dynamics in uracil: Time-resolved photoion yield studies using a laser-based thermal
Omair Ghafur1, Stuart W Crane1, Michal Ryszka2
1Institute of Photonics and Quantum Sciences, Heriot-Watt University, Edinburgh EH14 4AS, United Kingdom.
Ultrafast laser measurements show uracil's excited state dynamics (<200 fs) do not produce the m/z=84 fragment, challenging previous interpretations of ring-opening mechanisms in RNA bases.
Area of Science:
- Physical Chemistry
- Photochemistry
- Molecular Spectroscopy
Background:
- Previous studies suggested a specific ion fragment (m/z = 84) in uracil photolysis indicated ultrafast ring-opening.
- This interpretation was based on nanosecond laser pulses at excitation wavelengths ≤232 nm.
Purpose of the Study:
- To investigate the ultrafast dynamics of uracil excited-state relaxation.
- To determine if the m/z = 84 fragment is a signature of ultrafast ring-opening.
- To explore non-adiabatic dynamics in uracil and related compounds.
Main Methods:
- Time-resolved ion-yield measurements using a novel ultra-high vacuum spectrometer with laser-based thermal desorption.
- Excitation at pump wavelengths of 267 nm, 220 nm, and 200 nm.
- Complementary measurements on 2-thiouracil at 267 nm.
Main Results:
- Confirmed rapid (<200 fs) relaxation of uracil's bright S3(1ππ*) state at 220 nm and 200 nm.
- Found no evidence for the m/z = 84 fragment within picoseconds of excitation at these wavelengths.
- Results at 267 nm agreed with previous cold molecular beam studies, indicating negligible internal energy effects.
Conclusions:
- The m/z = 84 fragment is not a direct product of ultrafast ring-opening in uracil.
- The previously observed fragment likely arises from slower excited-state processes.
- This study refines our understanding of uracil photodynamics and excited-state reaction pathways.
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