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Updated: Oct 29, 2025

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Deep-Tissue Three-Photon Fluorescence Microscopy in Intact Mouse and Zebrafish Brain
Published on: January 13, 2022
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3D super-resolution deep-tissue imaging in living mice.
Mary Grace M Velasco1,2, Mengyang Zhang3,4, Jacopo Antonello5
1Department of Biomedical Engineering, Yale School of Engineering & Applied Science, New Haven, Connecticut 06520, USA.
Optica
|July 9, 2021
Summary
This study introduces an advanced stimulated emission depletion (STED) microscopy system for deep-tissue super-resolution imaging. The new system overcomes optical barriers, enabling clear 3D visualization of nanoscale structures within living biological tissues.
Area of Science:
- Biophysics
- Microscopy
- Cell Biology
Background:
- Stimulated emission depletion (STED) microscopy provides 3D super-resolution imaging of dynamic nanoscale structures in living cells.
- Deep-tissue imaging with 3D-STED is limited by optical aberrations and light scattering.
Purpose of the Study:
- To develop and demonstrate a STED system capable of overcoming deep-tissue imaging challenges.
- To achieve aberration-corrected 3D super-resolution imaging deep within biological tissues.
Main Methods:
- Integration of two-photon excitation with adaptive optics.
- Utilization of red-emitting organic dyes and a long-working-distance water-immersion objective lens.
- Implementation of a novel STED microscopy system.
Main Results:
- Demonstrated aberration-corrected 3D super-resolution imaging at 164 µm depth in fixed mouse brain tissue.
- Achieved 76 µm depth imaging in the brain of a living mouse with high resolution.
- Successfully overcame optical aberrations and light scattering for deep-tissue STED.
Conclusions:
- The developed STED system significantly advances the capability for deep-tissue super-resolution microscopy.
- This technology offers unprecedented insights into the organization of nanoscale structures in vivo.
- The system holds promise for future biological and biomedical research requiring deep-tissue imaging.

