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Updated: Oct 6, 2025

Functional Characterization of RING-Type E3 Ubiquitin Ligases In Vitro and In Planta
Published on: December 5, 2019
MUL1-RING recruits the substrate, p53-TAD as a complex with UBE2D2-UB conjugate
Min-Sung Lee1,2, Sang-Ok Lee1,3, Joonhyeok Choi4
1Disease Target Structure Research Center, Division of Biomedical Research, KRIBB, Daejeon, South Korea.
Abstract:
The RING domain of MUL1 (RINGMUL1 ) alone mediates ubiquitylation of the p53-transactivation domain (TADp53 ). To elucidate the mechanism underlying the simultaneous recruitment of UBE2D2 and the substrate TADp53 by RINGMUL1 , we determined the complex structure of RINGMUL1 :UBE2D2 and studied the interaction between RINGMUL1 and TADp53 in the presence of UBE2D2-UB thioester (UBE2D2~UB) mimetics. The RINGMUL1 -binding induced the closed conformation of UBE2D2S22R/C85S -UBK48R oxyester (UBE2D2RS -UBR OE ), and strongly accelerated its hydrolysis, which was suppressed by the additional N77A-mutation of UBE2D2. Interestingly, UBE2D2S22R/N77A/C85S -UBK48R oxyester (UBE2D2RAS -UBR OE ) already formed a closed conformation in the absence of RINGMUL1 . Although TADp53 exhibited weak binding for RINGMUL1 or UBE2D2 alone, its binding affinity was enhanced and even further for RINGMUL1 :UBE2D2 and RINGMUL1 :UBE2D2RAS -UBR OE , respectively. The recognition of TADp53 by RINGMUL1 as a complex with UBE2D2~UB is related to the multivalency of the binding events and underlies the ability of RINGMUL1 to ubiquitylate the intrinsically disordered protein, TADp53 .
Insights
The MUL1 RING domain recruits UBE2D2 and p53 simultaneously, enabling ubiquitylation. This involves UBE2D2 conformational changes and enhanced p53 binding, revealing a multivalent interaction mechanism.
Area of Science:
- Biochemistry
- Molecular Biology
- Structural Biology
Background:
- The MUL1 RING domain (RINGMUL1) mediates ubiquitylation of the p53-transactivation domain (TADp53).
- Understanding the recruitment mechanism of UBE2D2 and TADp53 by RINGMUL1 is crucial for elucidating ubiquitylation pathways.
Purpose of the Study:
- To determine the structural basis for the simultaneous recruitment of UBE2D2 and TADp53 by RINGMUL1.
- To investigate the conformational changes in UBE2D2 upon binding to RINGMUL1 and its effect on TADp53 interaction.
Main Methods:
- Complex structure determination of RINGMUL1:UBE2D2.
- Interaction studies using UBE2D2-UB thioester mimetics and TADp53.
- Analysis of UBE2D2 mutations (S22R/C85S, N77A) and their impact on conformation and hydrolysis.
Main Results:
- RINGMUL1 binding induces a closed conformation of UBE2D2RS-UBROE and accelerates its hydrolysis, an effect modulated by the N77A mutation.
- UBE2D2RAS-UBROE adopts a closed conformation even without RINGMUL1.
- TADp53 binding affinity increases significantly for the RINGMUL1:UBE2D2 and RINGMUL1:UBE2D2RAS-UBROE complexes.
Conclusions:
- The simultaneous recognition of TADp53 by RINGMUL1 in complex with UBE2D2~UB is driven by multivalent binding events.
- This multivalent interaction mechanism underlies the ability of RINGMUL1 to ubiquitylate the intrinsically disordered TADp53.
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