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Updated: Sep 8, 2025

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Generating CRISPR/Cas9 Mediated Monoallelic Deletions to Study Enhancer Function in Mouse Embryonic Stem Cells
Published on: April 2, 2016
14.3K
Efficient isolation of mouse deletion mutant embryonic stem cells by CRISPR
Yuhan Liu1,2, Qian Chen1, Chenglin Song1
1School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.
STAR Protocols
|June 13, 2022
Summary
This study presents a new CRISPR-Cas9 method for efficiently isolating mouse embryonic stem cell clones with targeted gene deletions. This technique speeds up the generation of genetically modified mice for studying gene function.
Area of Science:
- Molecular Biology
- Genetics
- Developmental Biology
Background:
- Understanding gene function is crucial for biological research.
- Mouse embryonic stem (ES) cells are valuable tools for genetic studies and creating mutant mice.
- Efficiently generating genetically modified ES cells is essential for these studies.
Purpose of the Study:
- To develop and describe an efficient method for isolating mouse ES cell clones with targeted gene deletions using CRISPR-Cas9.
- To facilitate the generation of mutant mice for functional genomics research.
Main Methods:
- Co-expression of two single-guide RNAs (sgRNAs) targeting a specific gene along with a puromycin-resistant gene in mouse ES cells.
- Utilizing CRISPR-Cas9 technology for precise gene editing.
- Employing transient puromycin selection to enrich for cells with successful gene deletion.
- Identifying deletion mutations in individual ES cell clones via Polymerase Chain Reaction (PCR).
Main Results:
- Successful and efficient isolation of ES cell clones harboring deletion mutations in target genes.
- Demonstration of a streamlined workflow from gene editing to clone identification.
Conclusions:
- The described CRISPR-Cas9 approach provides an efficient strategy for isolating ES cell clones with desired gene deletions.
- This method can accelerate the study of gene function through the rapid generation of genetically modified mouse models.

