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Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
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A purely data-driven framework for prediction, optimization, and control of networked processes.

Ali Tavasoli1, Teague Henry2, Heman Shakeri1

  • 1School of Data Science, University of Virginia, Charlottesville, 22904, VA, United States of America.

ISA Transactions
|April 10, 2023
PubMed
Summary
This summary is machine-generated.

This study introduces a data-driven framework to identify and control complex network dynamics without prior network knowledge. It uses the Koopman operator to simplify nonlinear problems into solvable optimization tasks for large-scale systems.

Keywords:
Complex networksKoopman operatorModel predictive control

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Area of Science:

  • Complex Systems Science
  • Network Science
  • Dynamical Systems Theory

Background:

  • Networks exhibit emergent behaviors from local interactions, but identifying their underlying nonlinear dynamics is challenging.
  • Existing methods often require prior knowledge of network structure, limiting applicability.
  • Controlling large-scale nonlinear network dynamics, especially with model predictive control (MPC), is computationally demanding.

Purpose of the Study:

  • To develop a data-driven framework for identifying and controlling stochastic nonlinear dynamics in large-scale networks.
  • To overcome the limitations of requiring prior network structure information.
  • To enable effective control of complex network systems using a simplified optimization approach.

Main Methods:

  • Utilized operator-theoretic techniques, specifically the Koopman operator, for system identification.
  • Employed a data-driven approach using two-step state snapshots without needing network topology.
  • Transformed nonlinear dynamics into a linear representation for tractable analysis and control.
  • Applied the derived linear Koopman model to model predictive control (MPC).

Main Results:

  • Successfully identified stochastic nonlinear dynamics using only state data.
  • Developed a low-dimensional linear representation of complex network dynamics.
  • Converted a challenging nonlinear programming problem in MPC to a convex quadratic programming problem.
  • Demonstrated a significant reduction in variables for optimization in large-scale network control.

Conclusions:

  • The proposed framework effectively identifies and controls nonlinear network dynamics from data alone.
  • The Koopman operator approach simplifies complex system analysis and control.
  • This method offers a computationally efficient solution for controlling large-scale nonlinear systems, particularly within MPC frameworks.