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Related Experiment Video

Updated: Jul 1, 2025

An Ultrahigh-throughput Microfluidic Platform for Single-cell Genome Sequencing
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Microfluidic Impedance Cytometry Enabled One-Step Sample Preparation for Efficient Single-Cell Mass Spectrometry.

Junwen Zhu1, Siyuan Pan2, Huichao Chai1

  • 1State Key Laboratory of Precision Measurement Technology and Instrument, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China.

Small (Weinheim an Der Bergstrasse, Germany)
|March 14, 2024
PubMed
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A novel microfluidic chip enables one-step sorting and desalting of single cells for mass spectrometry (MS). This impedance flow cytometry (IFC) method streamlines sample preparation, improving efficiency and enabling direct MS analysis.

Area of Science:

  • Biomedical Engineering
  • Analytical Chemistry
  • Cell Biology

Background:

  • Single-cell mass spectrometry (MS) requires efficient sample preparation, including cell sorting and desalting.
  • Traditional methods are often complex, require multiple apparatus, or have insufficient performance.

Purpose of the Study:

  • To develop a one-step sample preparation strategy for single-cell MS.
  • To integrate cell sorting and desalting using microfluidics.

Main Methods:

  • Utilized label-free impedance flow cytometry (IFC) based microfluidics for single-cell characterization and sorting.
  • Developed a microfluidic chip for simultaneous sorting and transferring cells to MS-compatible solutions.

Main Results:

Keywords:
impedance flow cytometrymass spectrometrysample preparationsingle‐cell analysissorting and desalting

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  • Achieved high sorting efficiency (>99%) and desalting efficiency (>99%).
  • Demonstrated high cancer cell purity (≈87%) in sorted samples.
  • Verified the workflow for separating and analyzing normal (MCF-10A) and cancer (MDA-MB-468) cells via MS.
  • Conclusions:

    • The proposed IFC microfluidic chip offers an efficient, one-step solution for single-cell sample preparation for MS.
    • This technology streamlines the workflow, enabling direct MS analysis and paving the way for multi-modal single-cell characterization.