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Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems.

Mauro Silberberg1,2,3, Henning Hermjakob3, Rahuman S Malik-Sheriff3,4

  • 1Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Física, Buenos Aires 1426, Argentina.

Bioinformatics (Oxford, England)
|July 30, 2024
PubMed
Summary

New Python packages, Poincaré and SimBio, enable efficient simulation of chemical reaction networks (CRNs) and dynamical systems. These pure Python tools offer enhanced extensibility and performance for systems biology and related fields.

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