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Updated: May 29, 2025

Construction and Systematical Symmetric Studies of a Series of Supramolecular Clusters with Binary or Ternary Ammonium Triphenylacetates
Published on: February 15, 2016
Crystal structure, Hirshfeld surface analysis, DFT and mol-ecular docking studies of ethyl
Harish Kumar Mahadevaiah1, Harishkumar Shivanna2, Anil Kumar Hanumaiah3
1Department of Physics Yuvaraja's College University of Mysore,Mysore 570005 Karnataka India.
Abstract:
In the title compound, C8H9BrN2O2, the C-O-C-C torsion angle between isonicotine and the ethyl group is 180.0 (2)°. Intra-molecular N-H⋯O and C-H⋯O inter-actions consolidate the mol-ecular structure. In the crystal, N-H⋯N inter-action form S(5) zigzag chains along [010]. The most significant contributions to the Hirshfeld surface arise from H⋯H (33.2%), Br⋯H/H⋯Br (20.9%), O⋯H/H⋯O (11.2%), C⋯H/H⋯C (11.1%) and N⋯H/H⋯N (10%) contacts. The topology of the three-dimensional energy frameworks was generated using the B3LYP/6-31 G(d,p) model to calculate the total inter-action energy. The net inter-action energies for the title compound are E ele = 59.2 kJ mol-1, E pol = 15.5 kJ mol-1, E dis = 140.3 kJ mol-1 and E rep = 107.2 kJ mol-1 with a total inter-action energy E tot of 128.8 kJ mol-1. The mol-ecular structure was optimized by density functional theory (DFT) at the B3LYP/6-311+G(d,p) level and the theoretical and experimentally obtained parameters were compared. The frontier mol-ecular orbitals HOMO and LUMO were generated, giving an energy gap ΔE of 4.0931 eV. The MEP was generated to identify active sites in the mol-ecule and mol-ecular docking studies carried out with the title compound (ligand) and the covid-19 main protease PDB ID: 6LU7, revealing a moderate binding affinity of -5.4 kcal mol-1.
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