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Quantifying uncertainty in phasor-based time-domain fluorescence lifetime imaging microscopy
Qinyi Chen1, Jongchan Park1, Shuqi Mu1
1Department of Bioengineering, University of California, Los Angeles, California 90095, USA.
Biomedical Optics Express
|August 14, 2025
Summary
This study introduces a new model to understand noise in phasor-based time-domain fluorescence lifetime imaging microscopy (FLIM). The model quantifies how photon shot noise affects measurements, improving FLIM reliability in low-light conditions.
Area of Science:
- Biophotonics
- Microscopy
- Spectroscopy
Background:
- Phasor analysis is a fit-free method for time-domain fluorescence lifetime imaging microscopy (FLIM).
- Quantitative accuracy in FLIM is limited by noise, especially photon shot noise, affecting lifetime and unmixing.
- Understanding noise propagation is crucial for reliable FLIM data.
Purpose of the Study:
- To develop a theoretical uncertainty model for phasor-based time-domain FLIM.
- To analytically capture the impact of photon shot noise on FLIM measurements.
- To improve the quantitative accuracy and reliability of phasor-based FLIM.
Main Methods:
- Developed a theoretical uncertainty model for phasor-based time-domain FLIM.
- Analytically modeled the propagation of photon shot noise.
- Validated the model using Monte Carlo simulations and experimental data from dyes and biological tissues.
Main Results:
- The model accurately captures the propagation of shot noise in phasor coordinates.
- Quantified the impact of noise on fluorophore weight estimation.
- Demonstrated improved reliability in photon-limited imaging scenarios.
Conclusions:
- The developed uncertainty model enhances the reliability of phasor-based time-domain FLIM.
- This approach is particularly beneficial for photon-limited imaging applications.
- The model provides a quantitative understanding of noise limitations in FLIM.

