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Preparation and In Vivo Use of an Activity-based Probe for N-acylethanolamine Acid Amidase
Published on: November 23, 2016
N-(4-Amino-1,2,5-oxa-diazol-3-yl)formamide
Firudin I Guseinov1,2, Tuncer Hökelek3, Elena V Shuvalova2
1Kosygin State University of Russia, 117997 Moscow, Russian Federation.
This study analyzes the crystal structure of C3H4N4O2, revealing molecular sheets formed by hydrogen bonds. Hirshfeld analysis highlights the dominance of hydrogen-based interactions in its crystal packing.
Area of Science:
- Crystallography
- Materials Science
- Chemical Physics
Background:
- The crystal structure of organic compounds is fundamental to understanding their physical and chemical properties.
- Hydrogen bonding plays a crucial role in molecular self-assembly and the formation of extended crystalline networks.
- Hirshfeld surface analysis provides quantitative insights into intermolecular interactions within crystal lattices.
Purpose of the Study:
- To elucidate the crystal structure of the title compound, C3H4N4O2.
- To investigate the nature and significance of intermolecular interactions, particularly hydrogen bonding, in the crystal packing.
- To quantify the contributions of different interactions to the overall crystal structure using Hirshfeld surface analysis.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the three-dimensional crystal structure.
- Analysis of intermolecular contacts, including hydrogen bonds (N-H⋯O, N-H⋯N, C-H⋯O, C-H⋯N), was performed.
- Hirshfeld surface analysis was utilized to assess the relative importance of various intermolecular interactions (H⋯O, H⋯N, H⋯H).
Main Results:
- The asymmetric unit contains two coplanar molecules (A and B) situated on mirror planes.
- Hydrogen bonds (N-H⋯O, N-H⋯N, C-H⋯O, C-H⋯N) organize the molecules into sheets parallel to the (010) plane.
- Hirshfeld surface analysis revealed that H⋯O/O⋯H and H⋯N/N⋯H interactions are the dominant forces (30-32% and 28-31%, respectively) driving the crystal packing, followed by H⋯H interactions (8-12%).
Conclusions:
- The crystal structure of C3H4N4O2 is characterized by extensive hydrogen bonding, leading to a layered motif.
- Intermolecular hydrogen bonds are the primary drivers of the crystal packing, significantly influencing the compound's solid-state architecture.
- Hirshfeld surface analysis confirms the critical role of H⋯O and H⋯N interactions in stabilizing the crystal lattice.
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