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Updated: Jan 8, 2026

Assessing Cellular Target Engagement by SHP2 PTPN11 Phosphatase Inhibitors
Published on: July 17, 2020
Mechanism of SHP2 activation by bis-Tyr-phosphorylated Gab1
Lisa Machner1, Alaa Shaikhqasem2, Tobias Gruber3
1Institut für Biochemie und Biotechnologie, Martin-Luther-Universität Halle-Wittenberg, 06120 Halle (Saale), Germany; Institut für Molekulare Medizin, Martin-Luther-Universität Halle-Wittenberg, 06120 Halle (Saale), Germany; Charles-Tanford-Proteinzentrum, Martin-Luther-Universität Halle-Wittenberg, 06120 Halle (Saale), Germany.
Abstract:
The non-receptor tyrosine phosphatase SHP2 (SH2 domain-containing protein tyrosine phosphatase 2) (PTPN11) is a regulator of diverse cellular functions including mitogenic activation and cell migration. It comprises two tandem Src-homology 2 (SH2) domains followed by the catalytic domain and is autoinhibited by the N-terminal SH2 domain blocking access to the active site. Mutations influencing auto-inhibition have been implicated in cancer and other diseases, and allosteric inhibitors have been developed that stabilize the inactive state. Here, we show that the intrinsically disordered bis-phosphorylated SHP2-activating peptide pY627pY659-Gab1 binds to both SH2 domains, undergoing partial ordering in the process. In addition to eliciting changes in SH2 domain dynamics, the peptide reorganizes their relative orientations to generate a new SH2-SH2 interface. Our data suggest an active conformation for SHP2 that is also applicable to the hematopoietic cell-specific SHP1 (PTPN6), shedding light on the activation mechanism of both enzymes and paving the way for the development of novel compounds to modulate SHP2 activity.
Insights
The study reveals how a specific peptide activates the SHP2 phosphatase by binding to its SH2 domains, altering enzyme dynamics and orientation. This finding illuminates SHP2
Area of Science:
- Biochemistry
- Molecular Biology
- Enzymology
Background:
- SHP2 (PTPN11) is a non-receptor tyrosine phosphatase regulating cell signaling.
- Its activity is crucial for processes like mitogenesis and cell migration.
- SHP2 is autoinhibited, with mutations linked to cancer and other diseases.
Purpose of the Study:
- To elucidate the activation mechanism of SHP2.
- To understand how SHP2-activating peptides interact with the enzyme.
- To provide insights for developing novel SHP2 modulators.
Main Methods:
- Biochemical assays using a bis-phosphorylated peptide (pY627pY659-Gab1).
- Analysis of SH2 domain dynamics and inter-domain orientations.
- Structural and functional characterization of SHP2-peptide interactions.
Main Results:
- The peptide binds to both SH2 domains of SHP2, inducing partial ordering.
- Peptide binding alters SH2 domain dynamics and their relative orientations.
- A novel SH2-SH2 interface is generated upon peptide binding.
- An active conformation of SHP2 is proposed, potentially applicable to SHP1.
Conclusions:
- The findings reveal a detailed mechanism of SHP2 activation by peptides.
- The proposed active conformation offers a framework for understanding SHP1 activation.
- This research paves the way for targeted drug development for SHP2-related diseases.
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