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Maximising imaging volumes of expanded tissues for inverted fluorescence microscopy
Miguel Cardoso Mestre1, Jacob R Lamb1, Madeline A Lancaster1
1MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK.
Biomedical Optics Express
|January 14, 2026
Summary
Expansion microscopy (ExM) enables nanoscale imaging by physically enlarging samples. A novel water-dipping objective and refractive-index-matched FEP film overcome depth limitations for high-resolution imaging of expanded tissues.
Area of Science:
- Biomedical Imaging
- Microscopy Techniques
- Cell Biology
Background:
- Expansion microscopy (ExM) enhances nanoscale imaging by physically enlarging biological samples within a hydrogel.
- Conventional inverted confocal microscopy faces challenges with deep imaging of ExM samples due to limited objective working distances in aqueous environments.
Purpose of the Study:
- To develop a practical and cost-effective method for high-resolution, deep volumetric imaging of expansion microscopy samples using standard inverted microscopes.
- To address the challenges posed by the refractive index mismatch and limited working distance in imaging enlarged biological samples.
Main Methods:
- Utilized an inverted water-dipping objective combined with a refractive-index-matched optical path created by fluorinated ethylene propylene (FEP) film.
- Employed a stable immersion setup using FEP film, Immersol W, water, and an FEP-based imaging dish.
- Characterized the optical path using point spread function (PSF) measurements and simulations.
Main Results:
- The FEP film introduced correctable defocus-like wavefront aberrations, enabling deep imaging.
- Achieved sub-micron lateral and axial resolution with stable image quality up to depths exceeding 800 µm.
- Demonstrated successful imaging of 4×-expanded U2OS cells and human cerebral organoids.
Conclusions:
- The developed system offers a low-cost, plug-and-play solution for high-resolution volumetric imaging of ExM samples.
- This approach enhances the accessibility of deep tissue imaging for expanded biological specimens using standard inverted microscopes.
- The method effectively overcomes previous limitations in imaging depth and resolution for expanded samples.
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