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FAIR Omics Data Management: Overview, Challenges, and Best Practices.

Francisco Pina-Martins1,2, Gil Poiares-Oliveira3,4, Jorge Oliveira3,4

  • 1Computational Biology and Population Genomics Group, cE3c-Center for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal. frmartins@ciencias.ulisboa.pt.

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Summary
This summary is machine-generated.

This chapter details FAIR principles for omics data management, offering strategies for reproducible, collaborative, and open science. It covers data management plans, metadata, and best practices for Findable, Accessible, Interoperable, and Reusable (FAIR) data.

Keywords:
AccessibleData managementFindableInteroperableReusable

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Area of Science:

  • Bioinformatics
  • Data Science
  • Genomics

Background:

  • Omics data is large-scale and heterogeneous, posing challenges for management.
  • Reproducibility, collaboration, and open science are crucial in omics research.

Purpose of the Study:

  • To provide a comprehensive overview of FAIR principles for omics data management.
  • To address challenges in handling large-scale, heterogeneous omics datasets.
  • To promote reproducibility, collaboration, and open science practices.

Main Methods:

  • Discussed strategies including Data Management Plans (DMPs).
  • Covered file organization, metadata standards, and ontologies.
  • Addressed repository selection, interoperability protocols, and security measures.

Main Results:

  • Outlined best practices for achieving Findable, Accessible, Interoperable, and Reusable (FAIR) data.
  • Provided recommendations for continuous improvement in data stewardship.
  • Emphasized strategies for cross-omics integration.

Conclusions:

  • Implementing FAIR principles is essential for effective omics data management.
  • Adherence to best practices enhances data reproducibility and accessibility.
  • Long-term data stewardship requires ongoing attention to FAIR principles and security.