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Genetic linkage between Bf S0.7 (Bf S1) and HLA-Bw50
Human Genetics
|January 1, 1980
Summary
The study found a strong genetic link between the Bf S0.7 variant and the Bw50 antigen in French Basques. This suggests the Bf S0.7 mutation is a recent evolutionary event, distinct from HLA-Bw21.
Area of Science:
- Human genetics
- Population genetics
- Immunogenetics
Background:
- Human Leukocyte Antigen (HLA) and properdin factor B (Bf) polymorphisms are crucial in immune response and disease susceptibility.
- Previous studies indicate an association between Bf S0.7 and HLA-Bw21, but the precise genetic relationship requires further investigation.
Purpose of the Study:
- To investigate the linkage disequilibrium between specific HLA and Bf polymorphisms in a French Basque population.
- To determine the evolutionary origin of the Bf S0.7 variant in relation to HLA-Bw21 and Bw50.
Main Methods:
- Analysis of HLA-A, B, C, DR, and Bf polymorphisms in 201 unrelated French Basque individuals.
- Statistical analysis to assess linkage disequilibrium, including delta and delta S values, and significance testing (P-value).
Main Results:
- A highly significant linkage disequilibrium was observed between the Bf S0.7 variant and the HLA-Bw50 subtypic specificity (delta = 0.0123, delta S=100%, P < 10(-8)).
- The Bf S0.7 variant and Bw50 antigen were not found in Mongoloid populations, suggesting a specific evolutionary trajectory.
Conclusions:
- The Bf S0.7 variant is strongly associated with HLA-Bw50, indicating a close genetic linkage.
- The absence of Bf S0.7 and Bw50 in Mongoloid populations supports the hypothesis that the Bf S0.7 mutation is a more recent evolutionary event than the HLA-Bw21 split.
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Genome-wide Association Studies-GWAS
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...

