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Current Opinion in Structural Biology|August 3, 2026
Probing the complexity of cellular RNA folding: Ensembles, intermediates, and isoformsAnthony M Mustoe, Danny IncarnatoMethods in Enzymology|November 1, 2023
Sequencing-based analysis of RNA structures in living cells with 2A3 via SHAPE-MaPDanny IncarnatoMethods in Molecular Biology (Clifton, N.J.)|June 4, 2021
RNA Post-Transcriptional Modification Mapping Data Analysis Using RNA FrameworkIlaria Manfredonia, Danny IncarnatoMethods in Molecular Biology (Clifton, N.J.)|April 9, 2021
RNA Framework for Assaying the Structure of RNAs by High-Throughput SequencingTycho Marinus, Danny IncarnatoJournal of Molecular Biology|May 20, 2022
Computational Approaches for RNA Structure Ensemble Deconvolution from Structure Probing DataSharon Aviran, Danny IncarnatoGenomics Data|October 21, 2015
High-throughput whole-genome sequencing of E14 mouse embryonic stem cellsDanny Incarnato, Francesco NeriBiochemical Society Transactions|December 28, 2020
Structure and regulation of coronavirus genomes: state-of-the-art and novel insights from SARS-CoV-2 studiesIlaria Manfredonia, Danny IncarnatoTrends in Biotechnology|December 19, 2016
The RNA Epistructurome: Uncovering RNA Function by Studying Structure and Post-Transcriptional ModificationsDanny Incarnato, Salvatore OlivieroNature Reviews. Genetics|November 8, 2022
Probing the dynamic RNA structurome and its functionsRobert C Spitale, Danny IncarnatoGenomics|July 9, 2014
High-throughput single nucleotide variant discovery in E14 mouse embryonic stem cells provides a new reference genome assemblyDanny Incarnato, Anna Krepelova, Francesco NeriPageof 11