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Cell Reports Methods|September 16, 2025
Methods, applications, and computational challenges in bait capture enrichmentJonathan E Bravo, Kimberly J Newsom, Noelle Noyes, et al.Frontiers in Bioengineering and Biotechnology|November 3, 2022
KARGAMobile: Android app for portable, real-time, easily interpretable analysis of antibiotic resistance genes <i>via</i> nanopore sequencingAlexander Barquero, Simone Marini, Christina Boucher, et al.Computational and Structural Biotechnology Journal|August 11, 2021
Buffering updates enables efficient dynamic de Bruijn graphsJarno Alanko, Bahar Alipanahi, Jonathen Settle, et al.International Symposium on String Processing and Information Retrieval : SPIRE ... : Proceedings. SPIRE (Symposium)|May 14, 2024
r-indexing the eBWTChristina Boucher, Davide Cenzato, Zsuzsanna Lipták, et al.Bioinformatics (Oxford, England)|May 29, 2020
Succinct dynamic de Bruijn graphsBahar Alipanahi, Alan Kuhnle, Simon J Puglisi, et al.Genome Research|September 23, 2025
Long-read reconstruction of many diverse haplotypes with deviderJim Shaw, Christina Boucher, Yun William Yu, et al.Genome Biology|May 18, 2023
SPUMONI 2: improved classification using a pangenome index of minimizer digestsOmar Y Ahmed, Massimiliano Rossi, Travis Gagie, et al.Gigascience|May 31, 2018
Error correcting optical mapping dataKingshuk Mukherjee, Darshan Washimkar, Martin D Muggli, et al.Bioinformatics (Oxford, England)|June 26, 2018
Practical dynamic de Bruijn graphsVictoria G Crawford, Alan Kuhnle, Christina Boucher, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 18, 2022
Finding Maximal Exact Matches Using the r-IndexMassimiliano Rossi, Marco Oliva, Paola Bonizzoni, et al.Pageof 12