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Bioinformatics (Oxford, England)|May 23, 2019
SPar-K: a method to partition NGS signal dataRomain Groux, Philipp BucherBioinformatics (Oxford, England)|March 8, 2018
PWMScan: a fast tool for scanning entire genomes with a position-specific weight matrixGiovanna Ambrosini, Romain Groux, Philipp BucherNucleic Acids Research|November 5, 2019
EPD in 2020: enhanced data visualization and extension to ncRNA promotersPatrick Meylan, René Dreos, Giovanna Ambrosini, et al.Nucleic Acids Research|October 26, 2017
MGA repository: a curated data resource for ChIP-seq and other genome annotated dataRené Dréos, Giovanna Ambrosini, Romain Groux, et al.Nucleic Acids Research|December 1, 2016
The eukaryotic promoter database in its 30th year: focus on non-vertebrate organismsRené Dreos, Giovanna Ambrosini, Romain Groux, et al.Nature Methods|January 17, 2017
SMiLE-seq identifies binding motifs of single and dimeric transcription factorsAlina Isakova, Romain Groux, Michael Imbeault, et al.Genome Biology|May 13, 2020
Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking studyGiovanna Ambrosini, Ilya Vorontsov, Dmitry Penzar, et al.BMC Bioinformatics|January 29, 2016
Predicting transcription factor site occupancy using DNA sequence intrinsic and cell-type specific chromatin featuresSunil Kumar, Philipp BucherNucleic Acids Research|November 30, 2012
UCNEbase--a database of ultraconserved non-coding elements and genomic regulatory blocksSlavica Dimitrieva, Philipp BucherBioinformatics (Oxford, England)|September 11, 2012
Genomic context analysis reveals dense interaction network between vertebrate ultraconserved non-coding elementsSlavica Dimitrieva, Philipp BucherPageof 9